Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
HIF3A
Entrez Gene ID
64344
Gene Name
hypoxia inducible factor 3 alpha subunit
Gene Aliases
HIF-3A, HIF3-alpha-1, IPAS, MOP7, PASD7, bHLHe17
Chromosome Location
Chr.19: 46297046 - 46343433 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_022462.4 NP_071907.4 3 - 4 411 101
NM_152794.3 NP_690007.1 4 - 5 507 101
NM_152795.3 NP_690008.2 4 - 5 475 101
NM_152796.2 NP_690009.1 3 - 4 411 101
XM_005259152.4 XP_005259209.1 5 - 6 603 101
XM_005259153.3 XP_005259210.2 2 - 3 274 101
XM_005259155.4 XP_005259212.1 5 - 6 603 101
XM_005259156.4 XP_005259213.1 5 - 6 603 101
XM_017027132.1 XP_016882621.1 5 - 6 603 101
XM_017027133.1 XP_016882622.1 5 - 6 603 101
XM_017027134.1 XP_016882623.1 4 - 5 473 101
XM_017027135.1 XP_016882624.1 4 - 5 507 101
XM_017027136.1 XP_016882625.1 5 - 6 603 101
XM_017027137.1 XP_016882626.1 4 - 5 507 101
XM_017027138.1 XP_016882627.1 4 - 5 473 101
XM_017027139.1 XP_016882628.1 3 - 4 397 101
XM_017027140.1 XP_016882629.1 3 - 4 327 101
XM_017027141.1 XP_016882630.1 3 - 4 369 101
XM_017027142.1 XP_016882631.1 3 - 4 397 101
GenBank mRNA AB054067.1 - 4 - 5 438 101
AB118749.1 - 4 - 5 456 101
AB295039.1 - 4 - 5 456 101
AF463492.1 - 4 - 5 470 101
AK021421.1 - 3 - 4 361 101
AK021653.1 - 4 - 5 501 101
AK027725.1 - 4 - 5 456 101
AK297828.1 - 3 - 4 397 101
AK299699.1 - 2 - 3 321 101
AK304747.1 - 4 - 5 539 101
AK314680.1 - 4 - 5 507 101
AL541807.3 - 4 - 5 478 101
BC026308.1 - 4 - 5 466 101
BC080551.1 - 4 - 5 446 101
BI772109.1 - 4 - 5 532 101
CF593418.1 - 3 - 4 347 101
DA559979.1 - 3 - 4 397 101
DA562618.1 - 4 - 5 487 101
DB176660.1 - 4 - 5 475 101
DR001068.1 - 4 - 5 483 102

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