Assay Design

The amplified product spans an exon junction and the probe and one of the primers sit within one exon. This assay may detect gDNA.

Gene Transcripts

Gene Symbol
SNHG6
Entrez Gene ID
641638
Gene Name
small nucleolar RNA host gene 6
Gene Aliases
HBII-276HG, NCRNA00058, U87HG
Chromosome Location
Chr.8: 66921930 - 66925542 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002599.1 2 - 3 218 183
GenBank mRNA AY264285.1 - 2 - 3 218 183


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA HY315657.1 - 2 - 3 Chr. 8 - 66921941 - 66925506 [+] on Build GRCh38 182
GenBankmRNA DB330125.1 - 2 - 3 Chr. 8 - 66921936 - 67096718 [+] on Build GRCh38 184
GenBankmRNA BF813358.1 - 2 - 3 154 Chr. 8 - 66921949 - 66925459 [-] on Build GRCh38 184
GenBankmRNA BQ924387.1 - 195 Chr. - - [-] on Build 183
GenBankmRNA BI769050.1 - 200 Chr. - - [-] on Build 183
GenBankmRNA EL946830.1 - 2 - 3 185 Chr. 8 - 66922045 - 66925495 [-] on Build GRCh38 183
GenBankmRNA BI669733.1 - 2 - 3 222 Chr. 8 - 66921925 - 66925541 [-] on Build GRCh38 183
GenBankmRNA DA126867.1 - 2 - 3 217 Chr. 8 - 66921984 - 66925541 [-] on Build GRCh38 183
GenBankmRNA AA828052.1 - 2 - 3 Chr. 8 - 66921984 - 66922731 [+] on Build GRCh38 183
GenBankmRNA CB130641.1 - 2 - 3 217 Chr. 8 - 66922002 - 66925541 [-] on Build GRCh38 183
GenBankmRNA BM510474.1 - 2 - 3 Chr. 8 - 66921984 - 66925490 [+] on Build GRCh38 183
GenBankmRNA BU193261.1 - 2 - 3 215 Chr. 8 - 66921934 - 66925530 [-] on Build GRCh38 183
GenBankmRNA AA101077.1 - 2 - 3 Chr. 8 - 66921984 - 66925507 [+] on Build GRCh38 183
GenBankmRNA BU193032.1 - 2 - 3 184 Chr. 8 - 66921934 - 66925508 [-] on Build GRCh38 183
GenBankmRNA BU195948.1 - 2 - 3 200 Chr. 8 - 66921968 - 66925524 [-] on Build GRCh38 183
GenBankmRNA HY072040.1 - 2 - 3 216 Chr. 8 - 66921934 - 66925540 [-] on Build GRCh38 183
GenBankmRNA AA307876.1 - 2 - 3 201 Chr. 8 - 66922048 - 66925525 [-] on Build GRCh38 183
GenBankmRNA BM784351.1 - 2 - 3 217 Chr. 8 - 66921984 - 66925541 [-] on Build GRCh38 183
GenBankmRNA BF966290.2 - 2 - 3 222 Chr. 8 - 66921934 - 66925541 [-] on Build GRCh38 183
GenBankmRNA DB498305.1 - 2 - 3 268 Chr. 8 - 66921934 - 66925591 [-] on Build GRCh38 183
GenBankmRNA BM768256.1 - 2 - 3 217 Chr. 8 - 66921968 - 66925541 [-] on Build GRCh38 183
GenBankmRNA AW958356.1 - 202 Chr. - - [-] on Build 183
GenBankmRNA AI245774.1 - 2 - 3 Chr. 8 - 66921989 - 66925473 [+] on Build GRCh38 183
GenBankmRNA BI918140.1 - 203 Chr. - - [-] on Build 183
GenBankmRNA HY294280.1 - 2 - 3 257 Chr. 8 - 66922000 - 66925542 [-] on Build GRCh38 183
GenBankmRNA DB471689.1 - 2 - 3 200 Chr. 8 - 66921984 - 66925523 [-] on Build GRCh38 184
GenBankmRNA HY117390.1 - 2 - 3 268 Chr. 8 - 66921984 - 66925591 [-] on Build GRCh38 183
GenBankmRNA BM740598.1 - 2 - 3 217 Chr. 8 - 66922322 - 66925541 [-] on Build GRCh38 184
GenBankmRNA BM842145.1 - 2 - 3 218 Chr. 8 - 66921984 - 66925542 [-] on Build GRCh38 183
GenBankmRNA BM842017.1 - 2 - 3 218 Chr. 8 - 66921984 - 66925542 [-] on Build GRCh38 183
GenBankmRNA HY279249.1 - 2 - 3 254 Chr. 8 - 66922022 - 66925541 [-] on Build GRCh38 183
GenBankmRNA BI550715.1 - 2 - 3 223 Chr. 8 - 66921934 - 66925542 [-] on Build GRCh38 183
GenBankmRNA BE254660.1 - 181 Chr. - - [-] on Build 183
GenBankmRNA BP425366.1 - 2 - 3 195 Chr. 8 - 66921938 - 66925511 [-] on Build GRCh38 184
GenBankmRNA HY259588.1 - 2 - 3 Chr. 8 - 66921934 - 66925540 [+] on Build GRCh38 183
GenBankmRNA BF740175.1 - 2 - 3 Chr. 8 - 66921984 - 66925526 [+] on Build GRCh38 183
GenBankmRNA AW630767.1 - 2 - 3 194 Chr. 8 - 66921971 - 66925518 [-] on Build GRCh38 183
GenBankmRNA HY075045.1 - 2 - 3 219 Chr. 8 - 66921984 - 66925540 [-] on Build GRCh38 183
GenBankmRNA DB569402.1 - 2 - 3 215 Chr. 8 - 66921936 - 66925539 [-] on Build GRCh38 183
GenBankmRNA BQ272382.1 - 2 - 3 Chr. 8 - 66921984 - 66925506 [+] on Build GRCh38 183
GenBankmRNA DA301664.1 - 2 - 3 269 Chr. 8 - 66921910 - 66925593 [-] on Build GRCh38 183
GenBankmRNA AA910353.1 - 2 - 3 Chr. 8 - 66921925 - 66922731 [+] on Build GRCh38 183
GenBankmRNA CB122847.1 - 2 - 3 189 Chr. 8 - 66921984 - 66925513 [-] on Build GRCh38 183
GenBankmRNA CK906031.1 - 2 - 3 Chr. 8 - 66921984 - 66925506 [+] on Build GRCh38 183
GenBankmRNA CD513777.1 - 2 - 3 229 Chr. 8 - 66921989 - 66925530 [-] on Build GRCh38 183
GenBankmRNA F24069.1 - 183 Chr. 11 - 76191801 - 76191834 [-] on Build GRCh38 183
GenBankmRNA BM737847.1 - 2 - 3 206 Chr. 8 - 66921984 - 66925530 [-] on Build GRCh38 183
GenBankmRNA BU566037.1 - 174 Chr. - - [-] on Build 183
GenBankmRNA BE789325.1 - 2 - 3 171 Chr. 8 - 66921991 - 66925496 [-] on Build GRCh38 183
GenBankmRNA BM840736.1 - 2 - 3 218 Chr. 8 - 66921996 - 66925542 [-] on Build GRCh38 183
GenBankmRNA F21431.1 - 2 189 Chr. 19 - 16889188 - 16890995 [+] on Build GRCh38 183
GenBankmRNA DB540433.1 - 2 - 3 200 Chr. 8 - 66921997 - 66925523 [-] on Build GRCh38 184
GenBankmRNA BE875021.1 - 2 - 3 184 Chr. 8 - 66921986 - 66925508 [-] on Build GRCh38 183
GenBankmRNA EL946282.1 - 2 - 3 209 Chr. 8 - 66921971 - 66925487 [-] on Build GRCh38 183
GenBankmRNA AA746183.1 - 2 - 3 Chr. 8 - 66921989 - 66925468 [+] on Build GRCh38 183
GenBankmRNA HY122223.1 - 2 - 3 215 Chr. 8 - 66921936 - 66925540 [-] on Build GRCh38 182
GenBankmRNA AA316590.1 - 2 - 3 189 Chr. 8 - 66921930 - 66925513 [-] on Build GRCh38 183
GenBankmRNA CB143382.1 - 2 - 3 313 Chr. 8 - 66922018 - 66926398 [-] on Build GRCh38 183
GenBankmRNA HY262474.1 - 2 - 3 Chr. 8 - 66921984 - 66925540 [+] on Build GRCh38 183
GenBankmRNA BQ229214.1 - 167 Chr. - - [-] on Build 183
GenBankmRNA AA829558.1 - 2 - 3 Chr. 8 - 66921997 - 66925505 [+] on Build GRCh38 183
GenBankmRNA HY359113.1 - 2 - 3 Chr. 8 - 66921995 - 66925542 [+] on Build GRCh38 183
GenBankmRNA BM511306.1 - 2 - 3 173 Chr. 8 - 66921984 - 66925490 [-] on Build GRCh38 183
GenBankmRNA AI718054.1 - 2 - 3 Chr. 8 - 66921995 - 66925484 [+] on Build GRCh38 183
GenBankmRNA BI669107.1 - 2 - 3 273 Chr. 8 - 66921934 - 66925598 [-] on Build GRCh38 183
GenBankmRNA HY162808.1 - 2 - 3 217 Chr. 8 - 66921987 - 66925540 [-] on Build GRCh38 183
GenBankmRNA BM737762.1 - 2 - 3 205 Chr. 8 - 66921984 - 66925529 [-] on Build GRCh38 183
GenBankmRNA AA522925.1 - 2 - 3 209 Chr. 8 - 66921986 - 66925531 [-] on Build GRCh38 183
GenBankmRNA BY796444.2 - 2 - 3 193 Chr. 8 - 66921935 - 66925517 [-] on Build GRCh38 183
GenBankmRNA BM016905.1 - 2 - 3 202 Chr. 8 - 66921935 - 66925526 [-] on Build GRCh38 183
GenBankmRNA AI000711.1 - 2 - 3 Chr. 8 - 66921941 - 66925475 [+] on Build GRCh38 183
GenBankmRNA BM737568.1 - 216 Chr. - - [-] on Build 183
GenBankmRNA F20193.2 - 190 Chr. - - [-] on Build 183
GenBankmRNA AA994678.1 - 2 - 3 Chr. 8 - 66921988 - 66925469 [+] on Build GRCh38 183
GenBankmRNA BU167862.1 - 2 - 3 218 Chr. 8 - 66921925 - 66925534 [-] on Build GRCh38 183
GenBankmRNA CN257859.1 - 2 - 3 195 Chr. 8 - 66921938 - 66925519 [-] on Build GRCh38 183
GenBankmRNA BQ931992.1 - 221 Chr. - - [-] on Build 183
GenBankmRNA BQ267112.1 - 2 - 3 189 Chr. 8 - 66921995 - 66925506 [-] on Build GRCh38 183
GenBankmRNA AJ712674.1 - 2 - 3 192 Chr. 8 - 66922010 - 66925516 [-] on Build GRCh38 183
GenBankmRNA BM974202.1 - 2 - 3 Chr. 8 - 66921934 - 66925510 [+] on Build GRCh38 183
GenBankmRNA AA633432.1 - 2 - 3 202 Chr. 8 - 66921984 - 66925524 [-] on Build GRCh38 183
GenBankmRNA BG034409.1 - 214 Chr. - - [-] on Build 183
GenBankmRNA BM014460.1 - 2 - 3 201 Chr. 8 - 66921934 - 66925525 [-] on Build GRCh38 183
GenBankmRNA W56516.1 - 185 Chr. - - [-] on Build 183
GenBankmRNA BF814456.1 - 2 - 3 154 Chr. 8 - 66921949 - 66925459 [-] on Build GRCh38 184
GenBankmRNA AA429085.1 - 2 - 3 206 Chr. 8 - 66921958 - 66925527 [-] on Build GRCh38 183
GenBankmRNA BU596037.1 - 220 Chr. - - [-] on Build 183
GenBankmRNA BQ440073.1 - 199 Chr. - - [-] on Build 183
GenBankmRNA BF212415.1 - 2 - 3 222 Chr. 8 - 66921933 - 66925545 [-] on Build GRCh38 183
GenBankmRNA BM743937.1 - 2 - 3 216 Chr. 8 - 66921990 - 66925541 [-] on Build GRCh38 183
GenBankmRNA AA988763.1 - 2 - 3 Chr. 8 - 66921984 - 66925470 [+] on Build GRCh38 183
GenBankmRNA CB963297.1 - 2 - 3 162 Chr. 8 - 66921984 - 66925481 [-] on Build GRCh38 183
GenBankmRNA BG032838.1 - 187 Chr. - - [-] on Build 183
GenBankmRNA F32174.1 - 2 - 3 149 Chr. 8 - 66922002 - 66925473 [-] on Build GRCh38 183
GenBankmRNA BG034121.1 - 2 - 3 207 Chr. 8 - 66921938 - 66925531 [-] on Build GRCh38 183
GenBankmRNA HY310750.1 - 2 - 3 Chr. 8 - 66921984 - 66925591 [+] on Build GRCh38 183
GenBankmRNA AI338584.1 - 2 - 3 Chr. 8 - 66921934 - 66925468 [+] on Build GRCh38 183
GenBankmRNA BQ073523.1 - 195 Chr. - - [-] on Build 183
GenBankmRNA HY192534.1 - 2 - 3 Chr. 8 - 66921941 - 66925544 [+] on Build GRCh38 183
GenBankmRNA HY066133.1 - 2 - 3 216 Chr. 8 - 66921948 - 66925540 [-] on Build GRCh38 183
GenBankmRNA BM741967.1 - 2 - 3 216 Chr. 8 - 66921991 - 66925541 [-] on Build GRCh38 183
GenBankmRNA CN482917.1 - 2 - 3 201 Chr. 8 - 66921934 - 66925525 [-] on Build GRCh38 183
GenBankmRNA BU565593.1 - 2 - 3 220 Chr. 8 - 66921984 - 66925541 [-] on Build GRCh38 183
GenBankmRNA AI719665.1 - 2 - 3 Chr. 8 - 66921994 - 66925484 [+] on Build GRCh38 184
GenBankmRNA HY112530.1 - 2 - 3 217 Chr. 8 - 66921948 - 66925540 [-] on Build GRCh38 183
GenBankmRNA CX752858.1 - 2 - 3 200 Chr. 8 - 66921934 - 66925524 [-] on Build GRCh38 183
GenBankmRNA CF129421.1 - 1 - 2 124 Chr. 8 - 66921934 - 66922723 [-] on Build GRCh38 184
GenBankmRNA AI000007.1 - 2 - 3 Chr. 8 - 66921987 - 66925484 [+] on Build GRCh38 183
GenBankmRNA BM016312.1 - 186 Chr. - - [-] on Build 183
GenBankmRNA HY196149.1 - 2 - 3 Chr. 8 - 66921995 - 66925488 [+] on Build GRCh38 183
GenBankmRNA BG703295.1 - 2 - 3 205 Chr. 8 - 66921984 - 66925525 [-] on Build GRCh38 184
GenBankmRNA DA154192.1 - 2 - 3 217 Chr. 8 - 66921818 - 66925541 [-] on Build GRCh38 183
GenBankmRNA HY084735.1 - 2 - 3 216 Chr. 8 - 66921987 - 66925540 [-] on Build GRCh38 183
GenBankmRNA BE673116.1 - 2 - 3 Chr. 8 - 66921936 - 66925484 [+] on Build GRCh38 183
GenBankmRNA HY280914.1 - 2 - 3 Chr. 8 - 66921941 - 66925499 [+] on Build GRCh38 183
GenBankmRNA CD513303.1 - 2 - 3 195 Chr. 8 - 66921984 - 66925519 [-] on Build GRCh38 183
GenBankmRNA BM015094.1 - 202 Chr. - - [-] on Build 183
GenBankmRNA CB161051.1 - 2 - 3 Chr. 8 - 66921925 - 66925460 [+] on Build GRCh38 183
GenBankmRNA AI458315.1 - 2 - 3 Chr. 8 - 66921938 - 66925476 [+] on Build GRCh38 183
GenBankmRNA AI860006.1 - 2 - 3 Chr. 8 - 66921936 - 66925480 [+] on Build GRCh38 183
GenBankmRNA BF592010.1 - 2 - 3 Chr. 8 - 66921936 - 66925493 [+] on Build GRCh38 183
GenBankmRNA BM760648.1 - 2 - 3 218 Chr. 8 - 66921991 - 66925542 [-] on Build GRCh38 183
GenBankmRNA HY056578.1 - 2 - 3 216 Chr. 8 - 66921934 - 66925540 [-] on Build GRCh38 183
GenBankmRNA DA084810.1 - 2 - 3 218 Chr. 8 - 66921839 - 66925542 [-] on Build GRCh38 183
GenBankmRNA BM737712.1 - 2 - 3 203 Chr. 8 - 66921986 - 66925527 [-] on Build GRCh38 183
GenBankmRNA BU953849.1 - 2 - 3 244 Chr. 8 - 66921987 - 66925566 [-] on Build GRCh38 184
GenBankmRNA HY012009.1 - 2 - 3 216 Chr. 8 - 66921987 - 66925540 [-] on Build GRCh38 183
GenBankmRNA AI300871.1 - 2 - 3 Chr. 8 - 66921968 - 66925478 [+] on Build GRCh38 183


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, C/D box 87 SNORD87 HBII-276, U87 Anti-sense Chr. - 66922474 - 66922549 on Build GRCh38
Downstream transcription factor 24 TCF24 TCF-24, bHLHa25 23.8kb Anti-sense Chr. - 66946501 - 66962592 on Build GRCh38

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