Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
AFG3L1P
Entrez Gene ID
172
Gene Name
AFG3 like matrix AAA peptidase subunit 1, pseudogene
Gene Aliases
AFG3, AFG3L1
Chromosome Location
Chr.16: 89972580 - 90000787 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_003226.1 4 - 5 546 82
NR_003227.1 4 - 5 473 82
NR_003228.1 4 - 5 512 82
GenBank mRNA AF329691.1 - 3 - 4 297 82
AF329693.1 - 3 - 4 297 82
AF329694.1 - 2 - 3 228 82
AK056488.1 - 4 - 5 499 82
AK091293.1 - 4 - 5 509 82
AK097044.1 - 4 - 5 460 82
AK126911.1 - 3 - 4 437 82
AK128804.1 - 1 - 2 90 82
BC021245.2 - 2 - 3 119 82


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DA127983.1 - 4 - 5 506 Chr. 16 - 89972586 - 89981861 [+] on Build GRCh38 82
GenBankmRNA DA207089.1 - 3 - 4 437 Chr. 16 - 89972586 - 89981830 [+] on Build GRCh38 82
GenBankmRNA DB001266.1 - 2 - 3 275 Chr. 16 - 89972586 - 89984591 [+] on Build GRCh38 82
GenBankmRNA DA990506.1 - 3 - 4 342 Chr. 16 - 89972586 - 89981886 [+] on Build GRCh38 82
GenBankmRNA DR003672.1 - 4 - 5 472 Chr. 16 - 89972627 - 89981857 [+] on Build GRCh38 82
GenBankmRNA DA705594.1 - 1 - 2 90 Chr. 16 - 89980245 - 89993893 [+] on Build GRCh38 82
GenBankmRNA DA009807.1 - 3 - 4 391 Chr. 16 - 89972593 - 89981920 [+] on Build GRCh38 82
GenBankmRNA DA927941.1 - 4 - 5 460 Chr. 16 - 89972594 - 89981891 [+] on Build GRCh38 82
GenBankmRNA DA474196.1 - 4 - 5 509 Chr. 16 - 89972617 - 89981824 [+] on Build GRCh38 82
GenBankmRNA DA104810.1 - 4 - 5 507 Chr. 16 - 89972587 - 89981843 [+] on Build GRCh38 82
GenBankmRNA DA112780.1 - 3 - 4 435 Chr. 16 - 89972589 - 89981926 [+] on Build GRCh38 82
GenBankmRNA DA114236.1 - 4 - 5 Chr. 16 - 89972587 - 89981818 [+] on Build GRCh38 82
GenBankmRNA BX114649.1 - 1 - 2 495 Chr. 16 - 89979841 - 89984629 [+] on Build GRCh38 82
GenBankmRNA BQ893592.1 - 1 - 2 395 Chr. 16 - 89979940 - 89990996 [+] on Build GRCh38 82
GenBankmRNA AW138208.1 - 2 - 3 Chr. 16 - 89980261 - 89984699 [-] on Build GRCh38 82
GenBankmRNA AI693214.1 - 2 - 3 Chr. 16 - 89977703 - 89984702 [-] on Build GRCh38 82
GenBankmRNA DA316906.1 - 2 - 3 273 Chr. 16 - 89972586 - 89990886 [+] on Build GRCh38 82
GenBankmRNA HY138169.1 - 3 - 4 316 Chr. 16 - 89972612 - 89981889 [+] on Build GRCh38 82
GenBankmRNA DA857528.1 - 4 - 5 500 Chr. 16 - 89972593 - 89981813 [+] on Build GRCh38 82
GenBankmRNA DB164996.1 - 4 - 5 497 Chr. 16 - 89972595 - 89981861 [+] on Build GRCh38 82
GenBankmRNA BF974129.1 - 120 Chr. - - [-] on Build 82
GenBankmRNA AI689825.1 - 2 - 3 Chr. 16 - 89977770 - 89984702 [-] on Build GRCh38 82
GenBankmRNA DN992972.1 - 4 - 5 401 Chr. 16 - 89972621 - 89981865 [+] on Build GRCh38 82
GenBankmRNA BG570268.1 - 4 - 5 420 Chr. 16 - 89972597 - 89984754 [+] on Build GRCh38 82
GenBankmRNA DB069789.1 - 3 - 4 438 Chr. 16 - 89972586 - 89981877 [+] on Build GRCh38 82
GenBankmRNA HY244029.1 - 2 - 3 Chr. 16 - 89980240 - 89984698 [-] on Build GRCh38 82
GenBankmRNA W22606.1 - Chr. - - [-] on Build 82
GenBankmRNA DA989185.1 - 4 - 5 467 Chr. 16 - 89972587 - 89981878 [+] on Build GRCh38 82
GenBankmRNA DA511246.1 - 4 - 5 507 Chr. 16 - 89972585 - 89981816 [+] on Build GRCh38 82
GenBankmRNA DA918429.1 - 4 - 5 499 Chr. 16 - 89972593 - 89981833 [+] on Build GRCh38 82
GenBankmRNA DA898575.1 - 4 - 5 506 Chr. 16 - 89972587 - 89981827 [+] on Build GRCh38 82
GenBankmRNA DA387750.1 - 3 - 4 441 Chr. 16 - 89972582 - 89981918 [+] on Build GRCh38 82
GenBankmRNA AA780055.1 - 2 - 3 Chr. 16 - 89980148 - 89984701 [-] on Build GRCh38 82
GenBankmRNA BF110425.1 - 2 - 3 Chr. 16 - 89977703 - 89984702 [-] on Build GRCh38 82


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream CENPB DNA-binding domain containing 1 CENPBD1 -7.4kb Anti-sense Chr. - 89969775 - 89972832 on Build GRCh38
Downstream dysbindin domain containing 1 DBNDD1 22.9kb Anti-sense Chr. - 90004865 - 90020131 on Build GRCh38

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