Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
CD44
Entrez Gene ID
960
Gene Name
CD44 molecule (Indian blood group)
Gene Aliases
CDW44, CSPG8, ECMR-III, HCELL, HUTCH-I, IN, LHR, MC56, MDU2, MDU3, MIC4, Pgp1
Chromosome Location
Chr.11: 35138870 - 35232402 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_000610.3 NP_000601.3 17 - 18 2462 70
NM_001001389.1 NP_001001389.1 16 - 17 2333 70
NM_001001390.1 NP_001001390.1 11 - 12 1715 70
NM_001001391.1 NP_001001391.1 8 - 9 1319 70
NM_001001392.1 NP_001001392.1 3 - 4 699 70
NM_001202555.1 NP_001189484.1 9 - 10 1523 70
NM_001202556.1 NP_001189485.1 7 - 8 1256 70
XM_005253231.2 XP_005253288.1 17 - 18 2192 70
XM_005253232.2 XP_005253289.1 17 - 18 2189 70
XM_005253233.2 XP_005253290.1 16 - 17 2072 70
XM_005253234.2 XP_005253291.1 16 - 17 2069 70
XM_005253235.2 XP_005253292.1 16 - 17 2063 70
XM_005253238.2 XP_005253295.1 13 - 14 1703 70
XM_005253239.2 XP_005253296.1 13 - 14 1697 70
XM_005253240.2 XP_005253297.1 12 - 13 1568 70
XM_006718388.1 XP_006718451.1 17 - 18 2186 70
XM_011520482.1 XP_011518784.1 16 - 17 1988 70
XM_011520483.1 XP_011518785.1 15 - 16 1937 70
XM_011520484.1 XP_011518786.1 15 - 16 1934 70
XM_011520485.1 XP_011518787.1 15 - 16 1931 70
XM_011520486.1 XP_011518788.1 12 - 13 1574 70
XM_011520488.1 XP_011518790.1 10 - 11 1238 70
XM_017018583.1 XP_016874072.1 16 - 17 2060 70
XM_017018584.1 XP_016874073.1 10 - 11 1301 70
XM_017018585.1 XP_016874074.1 9 - 10 1172 70
GenBank mRNA AF098641.1 - 3 - 4 283 70
AJ251595.1 - 17 - 18 2206 70
AK129808.1 - 7 - 8 714 70
AK290424.1 - 8 - 9 885 70
AK297776.1 - 8 - 9 925 70
AK304467.1 - 7 - 8 822 70
AK307707.1 - 7 - 8 780 70
AL832642.2 - 8 - 9 1319 70
AY101192.1 - 11 - 12 1397 70
AY101193.1 - 8 - 9 1002 70
BC004372.1 - 16 - 17 2030 70
BC052287.1 - 7 - 8 873 70
BC067348.1 - 8 - 9 1002 70
EF581837.1 - 9 - 10 1100 70
FJ216964.1 - 7 - 8 822 70
M24915.1 - 8 - 9 1000 70
M59040.1 - 8 - 9 913 70
S66400.1 - 11 - 12 1331 70
U40373.1 - 8 - 9 949 70
X55150.1 - 11 - 12 1404 70
X56794.1 - 11 - 12 1396 70
X66733.1 - 16 - 17 2028 70

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