Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
SNRPN
Entrez Gene ID
6638
Gene Name
small nuclear ribonucleoprotein polypeptide N
Gene Aliases
HCERN3, PWCR, RT-LI, SM-D, SMN, SNRNP-N, SNURF-SNRPN, sm-N
Chromosome Location
Chr.15: 24823637 - 24978723 on Build GRCh38
Interrogated Sequence Translated Protein RNADB ID Exon Boundary Assay Location Amplicon Length
GenBank mRNA AF400486.1 - LIT2209
IC-SNURF-SNRPN 3 prime noncoding transcripts		 31 - 32 4351 67
AF400487.1 - LIT2225
IC-SNURF-SNRPN 3 prime noncoding transcripts		 19 - 20 2626 67
AF400488.1 - LIT2213
IC-SNURF-SNRPN 3 prime noncoding transcripts		 13 - 14 2034 67
AL832758.1 -
29 - 30 3859 67
BC080646.1 -
29 - 30 3974 67


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CX784455.1 - 2 - 3 173 Chr. 15 - 25109679 - 25115582 [+] on Build GRCh38 67
GenBankmRNA CD656044.1 - 4 - 5 632 Chr. 15 - 25108997 - 25115502 [+] on Build GRCh38 67
GenBankmRNA AV723198.1 - 2 - 3 228 Chr. 15 - 25109624 - 25115659 [+] on Build GRCh38 67
GenBankmRNA BQ232448.1 - 366 Chr. - - [-] on Build 67
GenBankmRNA BF924163.1 - 1 - 2 101 Chr. 15 - 25111805 - 25118330 [+] on Build GRCh38 67
GenBankmRNA DA713846.1 - 1 - 2 112 Chr. 15 - 25111789 - 25117439 [+] on Build GRCh38 67
GenBankmRNA DN602149.1 - 1 - 2 140 Chr. 15 - 25111764 - 25115582 [+] on Build GRCh38 67
GenBankmRNA H93815.1 - 2 - 3 203 Chr. 15 - 25109649 - 25115457 [+] on Build GRCh38 67
GenBankmRNA DA730536.1 - 5 - 6 637 Chr. 15 - 25108011 - 25115533 [+] on Build GRCh38 67
GenBankmRNA CX784383.1 - 2 - 3 172 Chr. 15 - 25109682 - 25115588 [+] on Build GRCh38 67
GenBankmRNA BG997197.1 - 1 - 2 Chr. 15 - 25109649 - 25115568 [-] on Build GRCh38 67
GenBankmRNA DB169513.1 - 2 - 3 288 Chr. 15 - 25109565 - 25115576 [+] on Build GRCh38 68
GenBankmRNA BM090581.1 - 1 - 2 162 Chr. 15 - 25111764 - 25117438 [+] on Build GRCh38 67
GenBankmRNA BF832617.1 - 1 - 2 Chr. 15 - 25109580 - 25115365 [-] on Build GRCh38 67


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, C/D box 116-30 SNORD116-30 HBII-85-30 -3.4kb Sense Chr. - 25108268 - 25108352 on Build GRCh38
Downstream imprinted in Prader-Willi syndrome (non-protein coding) IPW NCRNA00002 886.0 Sense Chr. - 25116545 - 25122476 on Build GRCh38

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