Product Details

Assay Reference Genome
Location

Chr.16:1362262 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

Target Gene Details

Entrez Gene ID
84572
Gene Symbol
GNPTG
Gene Name
N-acetylglucosamine-1-phosphate transferase gamma subunit
Gene Aliases
C16orf27, GNPTAG, LP2537, RJD9
Location
Chr.16:1351899-1363351 on build GRCh38
Assay Gene Location
Overlaps Exon 8 - Intron 8
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
GNPTG NM_032520.4 NP_115909.1
XM_017023782.1 XP_016879271.1
XM_017023783.1 XP_016879272.1
AF302786.1 AAG27706.1
AK126110.1 3 1484
AK312067.1
AY203933.1 AAP34456.1
BC014592.1 AAH14592.1
BC131525.1
BU145878.1
BX398427.1
DT219524.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762143 Chr16:1270592 - 1519404 on Build GRCh38 Gain PTX4 UBE2I GNPTG C16orf91 CCDC154 TSR3 IFT140 CLCN7 LOC105371045 UNKL BAIAP3 TELO2
dgv473e214 Chr16:1356674 - 1364974 on Build GRCh38 Loss GNPTG UNKL
esv2422427 Chr16:10001 - 2723164 on Build GRCh38 Duplication HS3ST6 PRR35 BRICD5 LOC100287175 MIR4516 NME3 LOC105371049 RAB11FIP3 NPRL3 TPSG1 LUC7L MRPL28 TBL3 SLC9A3R2 IFT140 HBA1 GNG13 PTX4 PDPK1 RNPS1 UBE2I MIR6511B1 SNORD60 SYNGR3 SNORA10 WDR24 CEMP1 TRAF7 DDX11L10 RPS2 SSTR5-AS1 LMF1-AS1 SNORA78 NPW SOX8 LOC652276 WASIR2 MCRIP2 TPSB2 RPL23AP5 CCDC154 ABCA17P HBM UNKL MIR3176 EME2 TMEM8A LOC105371184 HN1L METRN ECI1 MIR662 RPUSD1 PRSS27 TSC2 ABCA3 MIR5587 CHTF18 MPG NARFL PDIA2 RPL3L WDR90 PKD1 MLST8 TBC1D24 TPSAB1 AXIN1 LOC105371046 MRPS34 TPSD1 C16orf59 SNRNP25 RHBDL1 FBXL16 RAB40C TELO2 SNHG9 NUBP2 NME4 MIR3677 DECR2 MSLN RAB26 JMJD8 NTHL1 MIR4717 HBQ1 NTN3 LOC101929280 CAPN15 MIR6767 CACNA1H NOXO1 LINC00254 PRSS29P SPSB3 KCTD5 LOC105371047 ZNF598 C1QTNF8 BAIAP3 RGS11 NDUFB10 GNPTG CRAMP1 LOC100134368 NHLRC4 SSTR5 CCNF WFIKKN1 RHOT2 CASKIN1 ATP6V0C C16orf91 CLCN7 MIR3180-5 RNF151 CCDC78 LOC106660606 LOC107987233 MIR3177 LINC00235 LOC729652 PIGQ LMF1 MIR6859-4 FLJ42627 SNORA64 ERVK13-1 FAHD1 PGP MAPK8IP3 LOC105371038 TMEM204 HAGHL FAM173A LOC105371045 POLR3K HBA2 METTL26 MIR6768 MEIOB DNASE1L2 HBZ HAGH GFER LOC107984876 MSRB1 TSR3 RHBDF1 PRR25 ARHGDIG STUB1 MIR3178 MIR940 MIR1225 AMDHD2 IGFALS SNHG19 FAM234A E4F1
nsv471066 Chr16:893361 - 1482836 on Build GRCh38 Loss UBE2I GNPTG CACNA1H LOC107984876 SSTR5 LMF1 TPSAB1 TSR3 PRSS29P TPSD1 SSTR5-AS1 LMF1-AS1 SOX8 TPSG1 C16orf91 TPSB2 CCDC154 C1QTNF8 CLCN7 LOC105371045 UNKL BAIAP3
dgv2692n100 Chr16:1002943 - 1394728 on Build GRCh38 Gain UBE2I GNPTG CACNA1H SSTR5 TPSAB1 TSR3 PRSS29P TPSD1 SSTR5-AS1 TPSG1 TPSB2 C1QTNF8 UNKL BAIAP3
nsv428316 Chr16:929650 - 1363252 on Build GRCh38 Gain+Loss UBE2I GNPTG CACNA1H SSTR5 LMF1 TPSAB1 TSR3 PRSS29P TPSD1 SSTR5-AS1 LMF1-AS1 SOX8 TPSG1 TPSB2 C1QTNF8 UNKL BAIAP3
nsv952899 Chr16:1142501 - 1535899 on Build GRCh38 Deletion PTX4 UBE2I GNPTG CACNA1H TPSAB1 TSR3 PRSS29P TPSD1 TELO2 TPSG1 LOC105371047 C16orf91 TPSB2 CCDC154 TMEM204 IFT140 CLCN7 LOC105371045 UNKL BAIAP3
nsv1046314 Chr16:1238517 - 1426464 on Build GRCh38 Loss UBE2I GNPTG C16orf91 TPSAB1 TSR3 PRSS29P TPSD1 UNKL BAIAP3
esv3637616 Chr16:1356693 - 1364925 on Build GRCh38 Gain GNPTG UNKL

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