Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
TPRXL
Entrez Gene ID
348825
Gene Name
tetrapeptide repeat homeobox like
Gene Aliases
TPRX3P
Chromosome Location
Chr.3: 13937307 - 14065984 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002223.3 3 - 3 1880 96
GenBank mRNA AK092426.1 - 3 - 3 1805 96
BC027729.2 - 5 - 5 1885 96


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AI453103.1 - 1 Chr. 3 - 14065499 - 14065979 [-] on Build GRCh38 96
GenBankmRNA BM811485.1 - 183 Chr. - - [-] on Build 96
GenBankmRNA BM764898.1 - 1 411 Chr. 3 - 14065191 - 14065781 [+] on Build GRCh38 96
GenBankmRNA BX111860.1 - 1 229 Chr. 3 - 14065373 - 14065986 [+] on Build GRCh38 96
GenBankmRNA AW303358.1 - 1 Chr. 3 - 14065514 - 14065982 [-] on Build GRCh38 96
GenBankmRNA R82240.1 - 1 229 Chr. 3 - 14065373 - 14065785 [+] on Build GRCh38 96
GenBankmRNA BM764893.1 - 1 411 Chr. 3 - 14065191 - 14065879 [+] on Build GRCh38 96
GenBankmRNA BM045145.1 - 1 186 Chr. 3 - 14065417 - 14065937 [+] on Build GRCh38 96
GenBankmRNA BU754588.1 - 1 Chr. 3 - 14065292 - 14065986 [-] on Build GRCh38 96
GenBankmRNA DB328394.1 - 1 Chr. 3 - 14065397 - 14065979 [-] on Build GRCh38 96


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream FYVE, RhoGEF and PH domain containing 5 pseudogene 1 FGD5P1 -128.3kb Anti-sense Chr. - 13933056 - 13936944 on Build GRCh38
Downstream coiled-coil-helix-coiled-coil-helix domain containing 4 CHCHD4 MIA40, TIMM40 46.1kb Sense Chr. - 14112077 - 14124871 on Build GRCh38

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