Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNORD55
Entrez Gene ID
26811
Gene Name
small nucleolar RNA, C/D box 55
Gene Aliases
RNU39, RNU55, SNORD39, U39, U55
Chromosome Location
Chr.1: 44775865 - 44775938 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_000015.2 1 - 1 36 71
GenBank mRNA X96654.1 - 1 - 1 36 71


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA HY177996.1 - 1 298 Chr. 1 - 44775603 - 44776059 [+] on Build GRCh38 71
GenBankmRNA BI523853.1 - 1 316 Chr. 1 - 44775588 - 44776448 [+] on Build GRCh38 71
GenBankmRNA DA638261.1 - 1 327 Chr. 1 - 44775574 - 44776153 [+] on Build GRCh38 71
GenBankmRNA CF130977.1 - 1 265 Chr. 1 - 44775636 - 44777759 [+] on Build GRCh38 71
GenBankmRNA AL527234.3 - 1 305 Chr. 1 - 44775596 - 44777627 [+] on Build GRCh38 71
GenBankmRNA CN285640.1 - 1 290 Chr. 1 - 44775621 - 44775974 [+] on Build GRCh38 71
GenBankmRNA DB269986.1 - 1 327 Chr. 1 - 44775574 - 44776106 [+] on Build GRCh38 71
GenBankmRNA DB163197.1 - 1 326 Chr. 1 - 44775575 - 44776141 [+] on Build GRCh38 71
GenBankmRNA DB137652.1 - 1 319 Chr. 1 - 44775582 - 44776132 [+] on Build GRCh38 71
GenBankmRNA DA587328.1 - 1 327 Chr. 1 - 44775574 - 44776152 [+] on Build GRCh38 71
GenBankmRNA DB502429.1 - 1 300 Chr. 1 - 44775601 - 44776072 [+] on Build GRCh38 71
GenBankmRNA DA960282.1 - 2 276 Chr. 1 - 44775574 - 44776191 [+] on Build GRCh38 71
GenBankmRNA AL540009.3 - 1 301 Chr. 1 - 44775600 - 44777383 [+] on Build GRCh38 71
GenBankmRNA DB053337.1 - 1 296 Chr. 1 - 44775605 - 44776145 [+] on Build GRCh38 71
GenBankmRNA DB129469.1 - 1 319 Chr. 1 - 44775582 - 44776127 [+] on Build GRCh38 71
GenBankmRNA DA684354.1 - 1 296 Chr. 1 - 44775605 - 44776688 [+] on Build GRCh38 71
GenBankmRNA DA956209.1 - 1 327 Chr. 1 - 44775574 - 44776125 [+] on Build GRCh38 71
GenBankmRNA DA960311.1 - 1 328 Chr. 1 - 44775573 - 44776145 [+] on Build GRCh38 71
GenBankmRNA DA086401.1 - 1 328 Chr. 1 - 44775574 - 44776145 [+] on Build GRCh38 71
GenBankmRNA BX445857.2 - 1 303 Chr. 1 - 44775599 - 44777319 [+] on Build GRCh38 71
GenBankmRNA DA775411.1 - 1 328 Chr. 1 - 44775574 - 44776140 [+] on Build GRCh38 71
GenBankmRNA DB048623.1 - 1 328 Chr. 1 - 44775574 - 44776158 [+] on Build GRCh38 71
GenBankmRNA BQ671268.1 - 293 Chr. - - [-] on Build 71
GenBankmRNA BM480019.1 - 372 Chr. - - [-] on Build 71
GenBankmRNA DA382372.1 - 1 328 Chr. 1 - 44775574 - 44776142 [+] on Build GRCh38 71
GenBankmRNA CR975361.1 - 180 Chr. - - [-] on Build 71
GenBankmRNA HY016323.1 - 1 324 Chr. 1 - 44775577 - 44776144 [+] on Build GRCh38 71
GenBankmRNA DA040416.1 - 1 319 Chr. 1 - 44775582 - 44776066 [+] on Build GRCh38 71


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream kinesin family member 2C KIF2C CT139, KNSL6, MCAK -8.1kb Sense Chr. - 44739704 - 44767767 on Build GRCh38
Downstream small nucleolar RNA, C/D box 46 SNORD46 RNU40, RNU46, U40, U46 554.0 Sense Chr. - 44776492 - 44776589 on Build GRCh38

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