Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNORA56
Entrez Gene ID
677835
Gene Name
small nucleolar RNA, H/ACA box 56
Gene Aliases
ACA56
Chromosome Location
Chr.X: 154774998 - 154775126 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002984.1 1 - 1 60 68
GenBank mRNA AJ609449.1 - 1 - 1 60 68

Gene Symbol
DKC1
Entrez Gene ID
1736
Gene Name
dyskerin pseudouridine synthase 1
Gene Aliases
CBF5, DKC, DKCX, NAP57, NOLA4, XAP101
Chromosome Location
Chr.X: 154762742 - 154777689 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001288747.1 NP_001275676.1 12 - 12 1835 68
GenBank mRNA JF279874.1 - 12 - 12 1658 68


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BQ720054.1 - 562 Chr. - - [-] on Build 68
GenBankmRNA CN312110.1 - 2 556 Chr. X - 154773151 - 154775234 [+] on Build GRCh38 68


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, H/ACA box 36A SNORA36A ACA36 -6.3kb Sense Chr. - 154768528 - 154768659 on Build GRCh38
Downstream membrane palmitoylated protein 1 MPP1 AAG12, DXS552E, EMP55, MRG1, PEMP 3.6kb Anti-sense Chr. - 154778684 - 154805527 on Build GRCh38

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