Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNRPN
Entrez Gene ID
6638
Gene Name
small nuclear ribonucleoprotein polypeptide N
Gene Aliases
HCERN3, PWCR, RT-LI, SM-D, SMN, SNRNP-N, SNURF-SNRPN, sm-N
Chromosome Location
Chr.15: 24823637 - 24978723 on Build GRCh38
Interrogated Sequence Translated Protein RNADB ID Exon Boundary Assay Location Amplicon Length
GenBank mRNA AF400486.1 - LIT2209
IC-SNURF-SNRPN 3 prime noncoding transcripts		 26 - 27 3616 129
AF400487.1 - LIT2225
IC-SNURF-SNRPN 3 prime noncoding transcripts		 14 - 15 1896 129
AF400488.1 - LIT2213
IC-SNURF-SNRPN 3 prime noncoding transcripts		 8 - 9 1300 129
AL832758.1 -
24 - 25 3125 129
BC080646.1 -
24 - 25 3244 129
BX648788.1 -
13 - 14 4033 129


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CN400012.1 - 4 - 5 504 Chr. 15 - 25099143 - 25109057 [+] on Build GRCh38 129
GenBankmRNA BG260807.1 - 4 - 5 457 Chr. 15 - 25099191 - 25109304 [+] on Build GRCh38 129
GenBankmRNA BE813620.1 - 4 - 5 457 Chr. 15 - 25099209 - 25107998 [+] on Build GRCh38 129
GenBankmRNA CN400013.1 - 2 - 3 169 Chr. 15 - 25106251 - 25109717 [+] on Build GRCh38 129
GenBankmRNA DA753905.1 - 3 - 4 Chr. 15 - 25103913 - 25109214 [+] on Build GRCh38 129
GenBankmRNA CN400008.1 - 2 - 3 248 Chr. 15 - 25106179 - 25109606 [+] on Build GRCh38 129
GenBankmRNA CD359646.1 - 2 - 3 240 Chr. 15 - 25106176 - 25109690 [+] on Build GRCh38 129
GenBankmRNA BF529069.1 - 3 - 4 293 Chr. 15 - 25103929 - 25109370 [+] on Build GRCh38 129
GenBankmRNA CN400009.1 - 2 - 3 165 Chr. 15 - 25106251 - 25107980 [+] on Build GRCh38 129
GenBankmRNA CN400003.1 - 2 - 3 211 Chr. 15 - 25106206 - 25108022 [+] on Build GRCh38 129
GenBankmRNA CN400006.1 - 3 - 4 282 Chr. 15 - 25103941 - 25109397 [+] on Build GRCh38 129
GenBankmRNA CN400000.1 - 2 - 3 262 Chr. 15 - 25106162 - 25108040 [+] on Build GRCh38 129
GenBankmRNA CD656624.1 - 4 - 5 451 Chr. 15 - 25103902 - 25109317 [+] on Build GRCh38 129


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, C/D box 116-29 SNORD116-29 HBII-85-29 -868.0 Sense Chr. - 25106520 - 25106604 on Build GRCh38
Downstream small nucleolar RNA, C/D box 116-30 SNORD116-30 HBII-85-30 230.0 Sense Chr. - 25108268 - 25108352 on Build GRCh38

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