Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNHG4
Entrez Gene ID
724102
Gene Name
small nucleolar RNA host gene 4
Gene Aliases
NCRNA00059, U19H
Chromosome Location
Chr.5: 139273752 - 139283184 on Build GRCh38
Interrogated Sequence Translated Protein RNADB ID Exon Boundary Assay Location Amplicon Length
RefSeq NR_003141.3
4 - 4 630 132
GenBank mRNA AJ224167.1 - LIT1319
U19HG		 4 - 4 251 132
CN337312.1 -
2 - 2 196 132
DA203569.1 -
1 - 1 114 132
DB192707.1 -
4 - 4 293 132


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CN337311.1 - 4 261 Chr. 5 - 139274121 - 139279250 [+] on Build GRCh38 132
GenBankmRNA DA381009.1 - 4 280 Chr. 5 - 139274102 - 139279448 [+] on Build GRCh38 132
GenBankmRNA DA070458.1 - 4 280 Chr. 5 - 139274102 - 139279412 [+] on Build GRCh38 132
GenBankmRNA DB129444.1 - 4 280 Chr. 5 - 139274102 - 139279422 [+] on Build GRCh38 132
GenBankmRNA DB192736.1 - 4 280 Chr. 5 - 139274104 - 139279454 [+] on Build GRCh38 133


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, H/ACA box 74A SNORA74A RNU19, U19 -72.0 Sense Chr. - 139278780 - 139278979 on Build GRCh38
Downstream poly(A) binding protein interacting protein 2 PAIP2 PAIP-2, PAIP2A 62.2kb Sense Chr. - 139341832 - 139369720 on Build GRCh38

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