Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
SEC13
Entrez Gene ID
6396
Gene Name
SEC13 homolog, nuclear pore and COPII coat complex component
Gene Aliases
D3S1231E, SEC13L1, SEC13R, npp-20
Chromosome Location
Chr.3: 10300929 - 10321188 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001136026.2 NP_001129498.1 2 - 3 315 86
NM_030673.3 NP_109598.2 2 - 3 171 86
XM_005265379.2 XP_005265436.1 2 - 3 188 86
XM_017007019.1 XP_016862508.1 2 - 3 225 86
XM_017007020.1 XP_016862509.1 1 - 2 32 86
GenBank mRNA AK301999.1 - 2 - 3 239 86
BC002634.2 - 2 - 3 52 86


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AL555288.3 - 2 - 3 211 Chr. 3 - 10305032 - 10321084 [-] on Build GRCh38 86
GenBankmRNA DB087344.1 - 2 - 3 213 Chr. 3 - 10315142 - 10321086 [-] on Build GRCh38 86
GenBankmRNA BP317384.1 - 2 - 3 95 Chr. 3 - 10305655 - 10321112 [-] on Build GRCh38 86
GenBankmRNA BQ218977.1 - 76 Chr. - - [-] on Build 86
GenBankmRNA BE388246.1 - 1 - 2 33 Chr. 3 - 10305630 - 10319173 [-] on Build GRCh38 86
GenBankmRNA CN420184.1 - 1 - 2 48 Chr. 3 - 10305125 - 10319173 [-] on Build GRCh38 86
GenBankmRNA DC396674.1 - 2 - 3 239 Chr. 3 - 10312595 - 10321112 [-] on Build GRCh38 86
GenBankmRNA CX787788.1 - 2 - 3 68 Chr. 3 - 10304046 - 10321085 [-] on Build GRCh38 86
GenBankmRNA BQ637172.1 - 2 - 3 65 Chr. 3 - 10305663 - 10321082 [-] on Build GRCh38 86


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream ghrelin opposite strand/antisense RNA GHRLOS GHRL-AS1, GHRLAS, NCRNA00068 -24.6kb Anti-sense Chr. - 10280952 - 10293449 on Build GRCh38
Downstream ATPase plasma membrane Ca2+ transporting 2 ATP2B2 PMCA2, PMCA2a, PMCA2i 4.7kb Sense Chr. - 10324023 - 10707962 on Build GRCh38

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