Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
POU6F1
Entrez Gene ID
5463
Gene Name
POU class 6 homeobox 1
Gene Aliases
BRN5, MPOU, TCFB1
Chromosome Location
Chr.12: 51186936 - 51218134 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_026893.1 5 - 6 602 65
XM_017019507.1 XP_016874996.1 5 - 6 1783 65
XM_017019508.1 XP_016874997.1 6 - 7 1694 65
XM_017019509.1 XP_016874998.1 4 - 5 703 65
XM_017019510.1 XP_016874999.1 5 - 6 1132 65
XM_017019511.1 XP_016875000.1 5 - 6 1301 65
XM_017019512.1 XP_016875001.1 5 - 6 657 65
XM_017019514.1 XP_016875003.1 5 - 6 1783 65
XM_017019515.1 XP_016875004.1 5 - 6 1129 65
XM_017019517.1 XP_016875006.1 5 - 6 1783 65
XM_017019518.1 XP_016875007.1 5 - 6 1783 65
XM_017019519.1 XP_016875008.1 5 - 6 1783 65
XM_017019522.1 XP_016875011.1 4 - 5 507 65
XM_017019526.1 XP_016875015.1 4 - 5 507 65
XM_017019527.1 XP_016875016.1 4 - 5 507 65
XM_017019529.1 XP_016875018.1 4 - 5 918 65
XM_017019530.1 XP_016875019.1 3 - 4 823 65
GenBank mRNA AK095191.1 - 5 - 6 602 65


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DB244012.1 - 4 - 5 507 Chr. 12 - 51197975 - 51217693 [-] on Build GRCh38 65
GenBankmRNA BX475523.1 - 3 - 4 340 Chr. 12 - 51196845 - 51204243 [-] on Build GRCh38 65


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream transcription factor CP2 TFCP2 LBP1C, LSF, LSF1D, SEF, TFCP2C -24.6kb Sense Chr. - 51093756 - 51173143 on Build GRCh38
Downstream DAZ associated protein 2 DAZAP2 PRTB 40.0kb Anti-sense Chr. - 51238724 - 51246717 on Build GRCh38

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