Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
MFSD9
Entrez Gene ID
84804
Gene Name
major facilitator superfamily domain containing 9
Gene Aliases
-
Chromosome Location
Chr.2: 102713867 - 102736888 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001322080.1 NP_001309009.1 6 - 6 5146 97
NM_001322081.1 NP_001309010.1 6 - 6 5047 97
NM_032718.4 NP_116107.3 6 - 6 5030 97
NR_136173.1 7 - 7 5114 97
NR_136174.1 7 - 7 2851 97
XM_011512005.2 XP_011510307.1 6 - 6 5153 97
XM_011512006.2 XP_011510308.1 6 - 6 4970 97
XM_011512007.2 XP_011510309.1 4 - 4 4627 97
GenBank mRNA CA426861.1 - 1 - 1 97
U79290.1 - 1 - 1 1552 97


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AI697733.1 - 1 Chr. 2 - 102714633 - 102715131 [+] on Build GRCh38 97
GenBankmRNA AI659212.1 - 1 Chr. 2 - 102714630 - 102715044 [+] on Build GRCh38 97
GenBankmRNA AI041723.1 - 1 Chr. 2 - 102714630 - 102715040 [+] on Build GRCh38 97
GenBankmRNA AW517278.1 - 1 Chr. 2 - 102714623 - 102715009 [+] on Build GRCh38 97
GenBankmRNA BE674234.1 - 1 Chr. 2 - 102714703 - 102715125 [+] on Build GRCh38 97
GenBankmRNA H09540.1 - 1 Chr. 2 - 102714630 - 102715007 [+] on Build GRCh38 97
GenBankmRNA AI804340.1 - 1 Chr. 2 - 102714630 - 102715115 [+] on Build GRCh38 97
GenBankmRNA BF375129.1 - 1 Chr. 2 - 102714706 - 102715097 [+] on Build GRCh38 97
GenBankmRNA BF910239.1 - 1 Chr. 2 - 102714729 - 102714932 [+] on Build GRCh38 97
GenBankmRNA BF909777.1 - 1 Chr. 2 - 102714735 - 102714942 [+] on Build GRCh38 97
GenBankmRNA BF095024.1 - 1 Chr. 2 - 102714730 - 102714932 [-] on Build GRCh38 97
GenBankmRNA AA626095.1 - 1 Chr. 2 - 102714632 - 102714964 [+] on Build GRCh38 97
GenBankmRNA AW474044.1 - 1 Chr. 2 - 102714630 - 102715110 [+] on Build GRCh38 97
GenBankmRNA BM311581.1 - 1 Chr. 2 - 102714630 - 102715181 [+] on Build GRCh38 97
GenBankmRNA AI381480.1 - 1 Chr. 2 - 102714630 - 102715089 [+] on Build GRCh38 97
GenBankmRNA AI280116.1 - 1 Chr. 2 - 102714630 - 102715081 [+] on Build GRCh38 97
GenBankmRNA AI040212.1 - 1 Chr. 2 - 102714630 - 102715051 [+] on Build GRCh38 97
GenBankmRNA AI950305.1 - 1 Chr. 2 - 102714623 - 102715095 [+] on Build GRCh38 97
GenBankmRNA BF111097.1 - 1 Chr. 2 - 102714630 - 102715109 [+] on Build GRCh38 97
GenBankmRNA AW517757.1 - 1 Chr. 2 - 102714627 - 102714933 [+] on Build GRCh38 98
GenBankmRNA AW001194.1 - 1 Chr. 2 - 102714631 - 102715145 [+] on Build GRCh38 97
GenBankmRNA CK821568.1 - 1 Chr. 2 - 102714630 - 102715206 [+] on Build GRCh38 97
GenBankmRNA AW513816.1 - 1 Chr. 2 - 102714631 - 102715109 [+] on Build GRCh38 97
GenBankmRNA BP395460.1 - 1 231 Chr. 2 - 102714630 - 102715123 [-] on Build GRCh38 97
GenBankmRNA BE671364.1 - 1 Chr. 2 - 102714703 - 102715122 [+] on Build GRCh38 97
GenBankmRNA AI689888.1 - 1 Chr. 2 - 102714633 - 102715022 [+] on Build GRCh38 97
GenBankmRNA BF223370.1 - 1 Chr. 2 - 102714630 - 102715172 [+] on Build GRCh38 97
GenBankmRNA AA746270.1 - 1 Chr. 2 - 102714630 - 102715035 [+] on Build GRCh38 97
GenBankmRNA CK821567.1 - 1 485 Chr. 2 - 102714809 - 102715377 [-] on Build GRCh38 97


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream solute carrier family 9 member A2 SLC9A2 NHE2 -3.3kb Anti-sense Chr. - 102619689 - 102711350 on Build GRCh38
Downstream transmembrane protein 182 TMEM182 20.5kb Anti-sense Chr. - 102736906 - 102843838 on Build GRCh38

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