Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SYNRG
Entrez Gene ID
11276
Gene Name
synergin, gamma
Gene Aliases
AP1GBP1, SYNG
Chromosome Location
Chr.17: 37514797 - 37613637 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001163544.2 NP_001157016.1 21 - 21 7487 108
NM_001163545.2 NP_001157017.1 21 - 21 7484 108
NM_001163546.2 NP_001157018.1 20 - 20 7316 108
NM_001163547.2 NP_001157019.1 20 - 20 7103 108
NM_007247.5 NP_009178.3 22 - 22 7721 108
NM_080550.4 NP_542117.3 20 - 20 7451 108
NM_198882.2 NP_942583.1 22 - 22 7556 108
XM_017024076.1 XP_016879565.1 24 - 24 8151 108
XM_017024077.1 XP_016879566.1 24 - 24 8070 108
XM_017024078.1 XP_016879567.1 23 - 23 8115 108
XM_017024079.1 XP_016879568.1 24 - 24 8088 108
XM_017024080.1 XP_016879569.1 24 - 24 12203 108
XM_017024081.1 XP_016879570.1 24 - 24 12200 108
XM_017024082.1 XP_016879571.1 22 - 22 8046 108
XM_017024083.1 XP_016879572.1 24 - 24 8016 108
XM_017024084.1 XP_016879573.1 24 - 24 8013 108
XM_017024085.1 XP_016879574.1 22 - 22 7983 108
XM_017024086.1 XP_016879575.1 23 - 23 7947 108
XM_017024087.1 XP_016879576.1 23 - 23 7944 108
XM_017024088.1 XP_016879577.1 23 - 23 7917 108
XM_017024089.1 XP_016879578.1 22 - 22 7911 108
XM_017024090.1 XP_016879579.1 23 - 23 7848 108
XM_017024091.1 XP_016879580.1 23 - 23 7767 108
XM_017024092.1 XP_016879581.1 22 - 22 7845 108
XM_017024093.1 XP_016879582.1 21 - 21 7743 108
XM_017024097.1 XP_016879586.1 22 - 22 7644 108
XM_017024099.1 XP_016879588.1 22 - 22 7533 108
XM_017024102.1 XP_016879591.1 20 - 20 7428 108
XM_017024106.1 XP_016879595.1 21 - 21 7410 108
GenBank mRNA AK091801.1 - 1 - 1 1652 108


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BQ008728.1 - 1 Chr. 17 - 37514807 - 37515554 [+] on Build GRCh38 108
GenBankmRNA AI472320.1 - 1 Chr. 17 - 37514898 - 37515443 [+] on Build GRCh38 108
GenBankmRNA AI499342.1 - 1 Chr. 17 - 37514914 - 37515345 [+] on Build GRCh38 108
GenBankmRNA AW957451.1 - 1 218 Chr. 17 - 37515058 - 37515462 [-] on Build GRCh38 108
GenBankmRNA AA908679.1 - 1 153 Chr. 17 - 37515047 - 37515399 [-] on Build GRCh38 108
GenBankmRNA BE009471.1 - 1 261 Chr. 17 - 37515071 - 37515498 [-] on Build GRCh38 108
GenBankmRNA AI769083.1 - 1 Chr. 17 - 37514891 - 37515387 [+] on Build GRCh38 108
GenBankmRNA BM788209.1 - 1 592 Chr. 17 - 37515159 - 37515839 [-] on Build GRCh38 108
GenBankmRNA HY334326.1 - 1 Chr. 17 - 37515000 - 37515480 [+] on Build GRCh38 108
GenBankmRNA AW139978.1 - 1 185 Chr. 17 - 37515054 - 37515417 [-] on Build GRCh38 108
GenBankmRNA BU074988.1 - 1 Chr. 17 - 37514912 - 37515451 [+] on Build GRCh38 108
GenBankmRNA DB319340.1 - 1 Chr. 17 - 37514911 - 37515435 [+] on Build GRCh38 108
GenBankmRNA W68456.1 - 206 Chr. - - [-] on Build 108
GenBankmRNA W16523.1 - 275 Chr. - - [-] on Build 108
GenBankmRNA CR736340.1 - 1 205 Chr. 17 - 37514896 - 37515451 [-] on Build GRCh38 108
GenBankmRNA BF982324.1 - 111 Chr. - - [-] on Build 108
GenBankmRNA N77571.1 - 1 217 Chr. 17 - 37514965 - 37515454 [-] on Build GRCh38 108
GenBankmRNA AA706617.1 - 1 Chr. 17 - 37514914 - 37515390 [+] on Build GRCh38 108
GenBankmRNA AI480384.1 - 1 Chr. 17 - 37514911 - 37515389 [+] on Build GRCh38 108
GenBankmRNA AI694580.1 - 1 Chr. 17 - 37514914 - 37515369 [+] on Build GRCh38 108
GenBankmRNA AA932112.1 - 1 Chr. 17 - 37515026 - 37515435 [+] on Build GRCh38 108
GenBankmRNA AI889704.1 - 1 Chr. 17 - 37514914 - 37515400 [+] on Build GRCh38 108
GenBankmRNA BE503606.1 - 1 Chr. 17 - 37514914 - 37515373 [+] on Build GRCh38 108
GenBankmRNA CB153900.1 - 1 Chr. 17 - 37514916 - 37515495 [+] on Build GRCh38 108
GenBankmRNA AI922449.1 - 1 Chr. 17 - 37514916 - 37515365 [+] on Build GRCh38 108
GenBankmRNA BE550032.1 - 1 Chr. 17 - 37514916 - 37515439 [+] on Build GRCh38 108
GenBankmRNA CB046992.1 - 1 Chr. 17 - 37514910 - 37515408 [+] on Build GRCh38 108
GenBankmRNA DB550583.1 - 1 161 Chr. 17 - 37514911 - 37515407 [-] on Build GRCh38 108
GenBankmRNA AW572554.1 - 1 Chr. 17 - 37514914 - 37515415 [+] on Build GRCh38 108
GenBankmRNA W40429.1 - 286 Chr. - - [-] on Build 108
GenBankmRNA EB388548.1 - 1 118 Chr. 17 - 37514917 - 37515358 [-] on Build GRCh38 108
GenBankmRNA BU182101.1 - 1 Chr. 17 - 37514914 - 37515733 [+] on Build GRCh38 108
GenBankmRNA AI347997.1 - 1 Chr. 17 - 37514915 - 37515445 [+] on Build GRCh38 109
GenBankmRNA BF224235.1 - 1 Chr. 17 - 37514914 - 37515421 [+] on Build GRCh38 108
GenBankmRNA AW117245.1 - 1 Chr. 17 - 37514912 - 37515449 [+] on Build GRCh38 108
GenBankmRNA CR748644.1 - 1 284 Chr. 17 - 37514865 - 37515524 [-] on Build GRCh38 108
GenBankmRNA BG170396.1 - 204 Chr. - - [-] on Build 108


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream dual specificity phosphatase 14 DUSP14 MKP-L, MKP6 -1.4kb Anti-sense Chr. - 37488561 - 37513501 on Build GRCh38
Downstream DEAD-box helicase 52 DDX52 HUSSY19, ROK1 92.8kb Sense Chr. - 37609739 - 37643464 on Build GRCh38

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