Assay Design
The assay primers and probes lie within a single exon. This assay will detect gDNA.
Gene Transcripts
- Gene Symbol
- GRIK1
- Entrez Gene ID
-
2897
- Gene Name
- glutamate ionotropic receptor kainate type subunit 1
- Gene Aliases
-
EAA3, EEA3, GLR5, GLUR5, GluK1, gluR-5
- Chromosome Location
-
Chr.21: 29536933 - 29940052 on Build GRCh38
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
Amplicon Length |
| RefSeq |
NM_000830.4 |
NP_000821.1 |
17 - 17 |
5737 |
103 |
| GenBank mRNA |
BC039447.1 |
- |
1 - 1 |
350 |
103 |
Non Gene Transcripts
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
IMAGE Clone ID |
Transcript Location |
Amplicon Length |
| GenBankmRNA |
CN478548.1 |
- |
1 |
|
|
Chr. 21 - 29550947 - 29551447 [+] on Build GRCh38 |
103 |
| GenBankmRNA |
BQ185795.1 |
- |
1 |
321 |
|
Chr. 21 - 29550953 - 29551447 [-] on Build GRCh38 |
103 |
| GenBankmRNA |
EL947853.1 |
- |
1 |
202 |
|
Chr. 21 - 29550861 - 29551327 [-] on Build GRCh38 |
103 |
| GenBankmRNA |
BI667006.1 |
- |
1 |
355 |
|
Chr. 21 - 29550831 - 29551477 [-] on Build GRCh38 |
103 |
Adjacent Gene Details
|
Gene Name |
Gene Symbol |
Alias |
Distance |
Relative Direction |
Location Chromosome |
| Upstream |
BACH1 intronic transcript 2 |
BACH1-IT2 |
|
-176.9kb
|
Anti-sense |
Chr. - 29372501 - 29373980 on Build GRCh38 |
| Downstream |
GRIK1 antisense RNA 2 |
GRIK1-AS2 |
C21orf41, NCRNA00258 |
44.6kb
|
Anti-sense |
Chr. - 29596040 - 29630747 on Build GRCh38 |
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