Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
VAPB
Entrez Gene ID
9217
Gene Name
VAMP associated protein B and C
Gene Aliases
ALS8, VAMP-B, VAP-B
Chromosome Location
Chr.20: 58389119 - 58451101 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001195677.1 NP_001182606.1 3 - 3 4031 66
NM_004738.4 NP_004729.1 6 - 6 4393 66
NR_036633.1 4 - 4 4208 66
GenBank mRNA AK124571.1 - 1 - 1 150 66


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DA227571.1 - 1 147 Chr. 20 - 58447409 - 58448073 [+] on Build GRCh38 66
GenBankmRNA DA240871.1 - 1 305 Chr. 20 - 58447252 - 58447846 [+] on Build GRCh38 66
GenBankmRNA BX954655.1 - 1 61 Chr. 20 - 58447495 - 58447981 [+] on Build GRCh38 66
GenBankmRNA DA318935.1 - 1 401 Chr. 20 - 58447156 - 58447807 [+] on Build GRCh38 66
GenBankmRNA DA121786.1 - 1 210 Chr. 20 - 58447346 - 58447907 [+] on Build GRCh38 66
GenBankmRNA DA097759.1 - 1 150 Chr. 20 - 58447405 - 58447928 [+] on Build GRCh38 66
GenBankmRNA CN292883.1 - 1 461 Chr. 20 - 58447099 - 58447859 [+] on Build GRCh38 66
GenBankmRNA AA062942.1 - 1 338 Chr. 20 - 58447219 - 58447668 [+] on Build GRCh38 66
GenBankmRNA DA325589.1 - 1 155 Chr. 20 - 58447401 - 58448007 [+] on Build GRCh38 66
GenBankmRNA BX476606.1 - 1 260 Chr. 20 - 58447296 - 58447974 [+] on Build GRCh38 66


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream RAB22A, member RAS oncogene family RAB22A -79.9kb Sense Chr. - 58309715 - 58367507 on Build GRCh38
Downstream APC down-regulated 1 like APCDD1L 1.4kb Anti-sense Chr. - 58459101 - 58514938 on Build GRCh38

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