Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
BNIP2
Entrez Gene ID
663
Gene Name
BCL2 interacting protein 2
Gene Aliases
BNIP-2, NIP2
Chromosome Location
Chr.15: 59659146 - 59689534 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001320674.1 NP_001307603.1 11 - 11 5857 77
NM_001320675.1 NP_001307604.1 10 - 10 5616 77
NM_004330.3 NP_004321.2 10 - 10 5821 77
GenBank mRNA AK125533.1 - 1 - 1 2152 77


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BU935242.1 - 1 480 Chr. 15 - 59659373 - 59660127 [-] on Build GRCh38 77
GenBankmRNA BQ003374.1 - 1 Chr. 15 - 59659146 - 59659818 [+] on Build GRCh38 77
GenBankmRNA AA133354.1 - 1 204 Chr. 15 - 59659148 - 59659853 [-] on Build GRCh38 77
GenBankmRNA AI342899.1 - 1 185 Chr. 15 - 59659431 - 59659834 [-] on Build GRCh38 77
GenBankmRNA BM806885.1 - 1 Chr. 15 - 59659498 - 59660407 [+] on Build GRCh38 77
GenBankmRNA BX097665.1 - 1 133 Chr. 15 - 59659146 - 59659783 [-] on Build GRCh38 77
GenBankmRNA BM727435.1 - 1 482 Chr. 15 - 59659525 - 59660131 [-] on Build GRCh38 77
GenBankmRNA BI467054.1 - 1 170 Chr. 15 - 59659332 - 59659816 [-] on Build GRCh38 77
GenBankmRNA R66765.1 - 135 Chr. - - [-] on Build 77
GenBankmRNA BU740897.1 - 1 Chr. 15 - 59659146 - 59659764 [+] on Build GRCh38 77
GenBankmRNA CA413536.1 - 1 Chr. 15 - 59659146 - 59659839 [+] on Build GRCh38 77
GenBankmRNA CD511861.1 - 1 188 Chr. 15 - 59659150 - 59659837 [-] on Build GRCh38 77
GenBankmRNA BE220131.1 - 1 185 Chr. 15 - 59659258 - 59659834 [-] on Build GRCh38 77


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream general transcription factor IIA subunit 2 GTF2A2 HsT18745, T18745, TF2A2, TFIIA, TFIIA-12, TFIIA-gamma, TFIIAS -1.6kb Sense Chr. - 59638062 - 59657541 on Build GRCh38
Downstream forkhead box B1 FOXB1 FKH5, HFKH-5 342.4kb Anti-sense Chr. - 60004222 - 60005943 on Build GRCh38

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