Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CDX2
Entrez Gene ID
1045
Gene Name
caudal type homeobox 2
Gene Aliases
CDX-3, CDX2/AS, CDX3
Chromosome Location
Chr.13: 27960918 - 27969368 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_011534875.2 XP_011533177.1 3 - 3 3166 98
XM_011534878.2 XP_011533180.1 3 - 3 3328 98
XM_011534879.2 XP_011533181.1 3 - 3 3293 98
GenBank mRNA AK000205.1 - 1 - 1 451 98


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AI345995.1 - 2 Chr. 13 - 27960920 - 27961560 [+] on Build GRCh38 98
GenBankmRNA AI340343.1 - 2 Chr. 13 - 27960920 - 27961547 [+] on Build GRCh38 98
GenBankmRNA AI733838.1 - 2 Chr. 13 - 27960920 - 27961537 [+] on Build GRCh38 98
GenBankmRNA AI346700.1 - 2 Chr. 13 - 27960920 - 27961512 [+] on Build GRCh38 98
GenBankmRNA AI276788.1 - 2 Chr. 13 - 27960920 - 27961520 [+] on Build GRCh38 98
GenBankmRNA AI309932.1 - 2 Chr. 13 - 27960920 - 27961474 [+] on Build GRCh38 98
GenBankmRNA AI340336.1 - 2 Chr. 13 - 27960920 - 27961509 [+] on Build GRCh38 98
GenBankmRNA AI285323.1 - 2 Chr. 13 - 27960920 - 27961452 [+] on Build GRCh38 98
GenBankmRNA AI304835.1 - 2 Chr. 13 - 27960920 - 27961492 [+] on Build GRCh38 98
GenBankmRNA AI261232.1 - 2 Chr. 13 - 27960920 - 27961508 [+] on Build GRCh38 98
GenBankmRNA AI346553.1 - 2 Chr. 13 - 27960920 - 27961499 [+] on Build GRCh38 98
GenBankmRNA AI367898.1 - 2 Chr. 13 - 27960920 - 27961474 [+] on Build GRCh38 98
GenBankmRNA AI733228.1 - 2 Chr. 13 - 27960923 - 27961526 [+] on Build GRCh38 98


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 ATP5EP2 -15.3kb Anti-sense Chr. - 27945206 - 27945573 on Build GRCh38
Downstream ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase URAD PRHOXNB 16.4kb Sense Chr. - 27978106 - 27988637 on Build GRCh38

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