Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
GAPLINC
Entrez Gene ID
100505592
Gene Name
gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA
Gene Aliases
LINC01540
Chromosome Location
Chr.18: 3466250 - 3478978 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_110428.1 3 - 3 397 87
NR_110429.1 3 - 3 423 87
GenBank mRNA AJ707365.1 - 3 - 3 360 87
BM782281.1 - 3 - 3 397 87
BX107736.1 - 3 - 3 335 87


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AW183164.1 - 1 Chr. 18 - 3467140 - 3478978 [-] on Build GRCh38 87
GenBankmRNA BG211766.1 - 1 161 Chr. 18 - 3478756 - 3478978 [+] on Build GRCh38 87
GenBankmRNA AI276074.1 - 1 Chr. 18 - 3466330 - 3478976 [-] on Build GRCh38 87
GenBankmRNA BM542398.1 - 316 Chr. - - [-] on Build 87
GenBankmRNA AI332834.1 - 1 Chr. 18 - 3467140 - 3478978 [-] on Build GRCh38 87
GenBankmRNA AI185492.1 - 1 Chr. 18 - 3478753 - 3478978 [-] on Build GRCh38 87
GenBankmRNA AX721193.1 - 848 Chr. - - [-] on Build 87
GenBankmRNA BG212292.1 - 1 171 Chr. 18 - 3478756 - 3478978 [+] on Build GRCh38 87
GenBankmRNA AI201458.1 - 1 Chr. 18 - 3467241 - 3478976 [-] on Build GRCh38 87
GenBankmRNA AA877764.1 - 1 Chr. 18 - 3473789 - 3478975 [-] on Build GRCh38 87
GenBankmRNA AI193604.1 - 1 Chr. 18 - 3467140 - 3478978 [-] on Build GRCh38 87


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream TGFB induced factor homeobox 1 TGIF1 HPE4, TGIF -20.3kb Anti-sense Chr. - 3411927 - 3458412 on Build GRCh38
Downstream DLG associated protein 1 DLGAP1 DAP-1, DAP-1-ALPHA, DAP-1-BETA, DAP1, DLGAP1A, DLGAP1B, GKAP, SAPAP1 17.1kb Sense Chr. - 3496032 - 4455307 on Build GRCh38

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