Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Samd4
Entrez Gene ID
74480
Gene Name
sterile alpha motif domain containing 4
Gene Aliases
1700024G08Rik, 1700111L17Rik, 4933436G17Rik, Samd4a, Smaug, Smaug1
Chromosome Location
Chr.14: 46882965 - 47105817 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001037221.2 NP_001032298.1 13 - 13 5837 68
NM_001163433.1 NP_001156905.1 12 - 12 5317 68
NM_028966.3 NP_083242.1 12 - 12 5573 68
GenBank mRNA AK135279.1 - 1 - 1 2547 68


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AI597433.1 - 1 161 Chr. 14 - 47104374 - 47104733 [+] on Build GRCm38 68
GenBankmRNA CX211056.1 - 1 411 Chr. 14 - 47104124 - 47104676 [+] on Build GRCm38 68
GenBankmRNA AA470221.1 - 1 161 Chr. 14 - 47104374 - 47104739 [+] on Build GRCm38 68
GenBankmRNA CK623025.1 - 1 243 Chr. 14 - 47104292 - 47104850 [+] on Build GRCm38 68


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream microRNA 378c Mir378c Gm27930, mmu-mir-378c -147.1kb Anti-sense Chr. - 46954830 - 46954928 on Build GRCm38
Downstream GTP cyclohydrolase 1 Gch1 GTP-CH, GTPCH, Gch 48.1kb Anti-sense Chr. - 47153895 - 47189402 on Build GRCm38

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