Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Ctsb
Entrez Gene ID
13030
Gene Name
cathepsin B
Gene Aliases
CB
Chromosome Location
Chr.14: 63122462 - 63145923 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
GenBank mRNA AK170968.1 - 1 - 1 1050 70


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BY685196.1 - 1 159 Chr. 14 - 63123411 - 63123782 [+] on Build GRCm38 70
GenBankmRNA CJ320039.1 - 1 220 Chr. 14 - 63123343 - 63123784 [+] on Build GRCm38 70
GenBankmRNA CJ299325.1 - 1 282 Chr. 14 - 63123282 - 63123784 [+] on Build GRCm38 70
GenBankmRNA CJ322575.1 - 1 178 Chr. 14 - 63123385 - 63123784 [+] on Build GRCm38 70
GenBankmRNA CJ318084.1 - 1 196 Chr. 14 - 63123367 - 63123784 [+] on Build GRCm38 70
GenBankmRNA BG067383.2 - 1 Chr. 14 - 63123090 - 63123784 [-] on Build GRCm38 70
GenBankmRNA BY571885.1 - 1 237 Chr. 14 - 63123326 - 63123782 [+] on Build GRCm38 70
GenBankmRNA CF425855.1 - 1 Chr. 14 - 63123352 - 63123953 [-] on Build GRCm38 70
GenBankmRNA EG563679.1 - 1 Chr. 14 - 63123509 - 63123798 [-] on Build GRCm38 70
GenBankmRNA CJ313790.1 - 1 244 Chr. 14 - 63123319 - 63123784 [+] on Build GRCm38 70
GenBankmRNA BY688065.1 - 1 174 Chr. 14 - 63123390 - 63123782 [+] on Build GRCm38 70
GenBankmRNA CJ312691.1 - 1 354 Chr. 14 - 63123210 - 63123784 [+] on Build GRCm38 70
GenBankmRNA BY665901.1 - 1 163 Chr. 14 - 63123401 - 63123784 [+] on Build GRCm38 70


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream RIKEN cDNA 2700070H01 gene 2700070H01Rik -64.4kb Sense Chr. - 63055073 - 63058149 on Build GRCm38
Downstream farnesyl diphosphate farnesyl transferase 1 Fdft1 SQS, SS 21.4kb Anti-sense Chr. - 63145150 - 63179655 on Build GRCm38

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