Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Atxn1
Entrez Gene ID
20238
Gene Name
ataxin 1
Gene Aliases
2900016G23Rik, Atx1, C85907, ENSMUSG00000074917, Gm10786, Sca1
Chromosome Location
Chr.13: 45549755 - 45965036 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001199304.1 NP_001186233.1 7 - 7 7432 71
NM_001199305.1 NP_001186234.1 8 - 8 7581 71
NM_009124.6 NP_033150.2 8 - 8 7557 71
GenBank mRNA AA435241.1 - 1 - 1 183 71
AI642908.1 - 1 - 1 188 71
AK019314.1 - 1 - 1 346 71
AK135987.1 - 1 - 1 1851 71


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BY712500.1 - 1 346 Chr. 13 - 45552673 - 45553124 [-] on Build GRCm38 71
GenBankmRNA CB237212.1 - 242 Chr. - - [-] on Build 71


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream guanosine monophosphate reductase Gmpr 2310004P21Rik, AV028449 -6.3kb Anti-sense Chr. - 45507429 - 45546386 on Build GRCm38
Downstream RIKEN cDNA 5033430I15 gene 5033430I15Rik 411.9kb Anti-sense Chr. - 45965060 - 45966508 on Build GRCm38

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