Assay Design
The assay primers and probes lie within a single exon. This assay will detect gDNA.
Gene Transcripts
- Gene Symbol
- Flg
- Entrez Gene ID
-
14246
- Gene Name
- filaggrin
- Gene Aliases
-
AW107830, ft
- Chromosome Location
-
Chr.3: 93273546 - 93293689 on Build GRCm38
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
Amplicon Length |
| GenBank mRNA |
AK076261.1 |
- |
2 - 2 |
1151 |
89 |
| AV230893.2 |
- |
1 - 1 |
519 |
89 |
| AW107830.1 |
- |
1 - 1 |
|
89 |
| J03458.1 |
- |
3 - 3 |
1349 |
89 |
Non Gene Transcripts
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
IMAGE Clone ID |
Transcript Location |
Amplicon Length |
| GenBankmRNA |
AA645085.1 |
- |
1 |
61 |
|
Chr. 3 - 93293487 - 93293693 [+] on Build GRCm38 |
89 |
| GenBankmRNA |
AI323493.1 |
- |
1 |
|
|
Chr. 3 - 93293217 - 93293693 [-] on Build GRCm38 |
89 |
| GenBankmRNA |
CJ238237.1 |
- |
1 |
330 |
|
Chr. 3 - 93293218 - 93293692 [+] on Build GRCm38 |
89 |
| GenBankmRNA |
BB371494.1 |
- |
1 |
146 |
|
Chr. 3 - 93293402 - 93293692 [+] on Build GRCm38 |
89 |
| GenBankmRNA |
CJ238937.1 |
- |
1 |
557 |
|
Chr. 3 - 93292991 - 93293691 [+] on Build GRCm38 |
89 |
| GenBankmRNA |
AA645130.1 |
- |
1 |
61 |
|
Chr. 3 - 93293487 - 93293693 [+] on Build GRCm38 |
89 |
Adjacent Gene Details
|
Gene Name |
Gene Symbol |
Alias |
Distance |
Relative Direction |
Location Chromosome |
| Upstream |
filaggrin family member 2 |
Flg2 |
EG229574 |
-71.7kb
|
Sense |
Chr. - 93197273 - 93221377 on Build GRCm38 |
| Downstream |
hornerin |
Hrnr |
1110033K19Rik, A530063N20Rik, S100a18 |
25.9kb
|
Sense |
Chr. - 93319541 - 93333572 on Build GRCm38 |
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