Product Details

SNP ID

rs998579

Assay Type

Validated

NCBI dbSNP Submissions

NA

Location

Chr.17:64150284 on Build GRCh38

Set Membership

HapMap Validated

Context Sequence [VIC/FAM]

GCTATTACCTTTGGTGGCCAAATGC[T/A]GAAAGAAAAGCTGAGAGAGTAAGCT

Phenotype

Polymorphism

T/A, Transversion Substitution

Allele Nomenclature

Literature Links

SNHG25 PubMed Links

Additional Information

For this assay, SNP(s) [rs147227884] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

SNHG25

Gene Name

small nucleolar RNA host gene 25

There are no transcripts associated with this gene.

Gene

SNORA50C

Gene Name

small nucleolar RNA, H/ACA box 50C

There are no transcripts associated with this gene.

Gene

SNORD104

Gene Name

small nucleolar RNA, C/D box 104

There are no transcripts associated with this gene.

Gene

TEX2

Gene Name

testis expressed 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001288732.1		Intron			NP_001275661.1
NM_001288733.1		Intron			NP_001275662.1
NM_018469.4		Intron			NP_060939.3
XM_011524998.1		Intron			XP_011523300.1
XM_011524999.1		Intron			XP_011523301.1
XM_011525000.1		Intron			XP_011523302.1
XM_017024846.1		Intron			XP_016880335.1
XM_017024847.1		Intron			XP_016880336.1

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