Product Details

SNP ID

rs55722259

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.18:26017021 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

ACCTTTGGGCTAGATGTTTTCAGAT[C/T]ATGCTTAAATAACCGTGGTTAGAAA

Phenotype

MIM: 600192

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

SS18 PubMed Links

Additional Information

For this assay, SNP(s) [rs80099396] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

SS18

Gene Name

SS18, nBAF chromatin remodeling complex subunit

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001007559.2	2643	UTR 3			NP_001007560.1
NM_001308201.1	2643	UTR 3			NP_001295130.1
NM_005637.3	2643	UTR 3			NP_005628.2
XM_006722527.2	2643	Intron			XP_006722590.1
XM_011526145.1	2643	UTR 3			XP_011524447.1
XM_011526147.2	2643	Intron			XP_011524449.1
XM_011526148.2	2643	Intron			XP_011524450.1
XM_011526149.2	2643	Intron			XP_011524451.1
XM_011526150.2	2643	Intron			XP_011524452.1
XM_011526151.2	2643	Intron			XP_011524453.1
XM_011526152.2	2643	Intron			XP_011524454.1

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