Product Details

SNP ID

rs59780529

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.2:127638623 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

CAAGGTCGGGGGGAGAGGGGCGGGG[C/T]GGAACCGAGGGCGGAGGCCAAGGTG

Phenotype

MIM: 603071 MIM: 607908 MIM: 606541

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

GPR17 PubMed Links

Additional Information

For this assay, SNP(s) [rs76475129] are located under a probe and SNP(s) [rs78022502] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

GPR17

Gene Name

G protein-coupled receptor 17

There are no transcripts associated with this gene.

Gene

LIMS2

Gene Name

LIM zinc finger domain containing 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001136037.2	1961	UTR 3			NP_001129509.2
NM_001161403.1	1961	UTR 3			NP_001154875.1
NM_001161404.1	1961	UTR 3			NP_001154876.1
NM_001256542.1	1961	UTR 3			NP_001243471.1
NM_017980.4	1961	UTR 3			NP_060450.2
XM_005263710.2	1961	UTR 3			XP_005263767.1
XM_006712627.3	1961	UTR 3			XP_006712690.1
XM_006712628.3	1961	Intron			XP_006712691.1
XM_011511453.1	1961	UTR 3			XP_011509755.1
XM_017004469.1	1961	UTR 3			XP_016859958.1

Gene

MYO7B

Gene Name

myosin VIIB

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001080527.1	1961	Intron			NP_001073996.1
XM_006712539.3	1961	Intron			XP_006712602.1
XM_011511218.2	1961	Intron			XP_011509520.1
XM_017004169.1	1961	Intron			XP_016859658.1

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