Product Details

SNP ID

rs1048210

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.6:109440889 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

CCGAGCCTGGGCGCCCGGATTTCGG[C/T]AGCGGATCGCCTTTCCGGGTTGGCG

Phenotype

MIM: 607129 MIM: 603498

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

MICAL1 PubMed Links

Additional Information

For this assay, SNP(s) [rs115963563] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

MICAL1

Gene Name

microtubule associated monooxygenase, calponin and LIM domain containing 1

There are no transcripts associated with this gene.

Gene

PPIL6

Gene Name

peptidylprolyl isomerase like 6

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001111298.2	283	UTR 5			NP_001104768.2
NM_001286360.1	283	UTR 5			NP_001273289.1
NM_001286361.1	283	UTR 5			NP_001273290.1
NM_173672.4	283	UTR 5			NP_775943.1
XM_011535765.2	283	Intron			XP_011534067.1
XM_011535766.2	283	Intron			XP_011534068.1
XM_011535767.2	283	Intron			XP_011534069.1
XM_011535769.2	283	Intron			XP_011534071.1
XM_017010774.1	283	Intron			XP_016866263.1

Gene

SMPD2

Gene Name

sphingomyelin phosphodiesterase 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_003080.2	283	UTR 5			NP_003071.2
XM_005267109.1	283	Intron			XP_005267166.1
XM_011536079.1	283	Intron			XP_011534381.1

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