Product Details

SNP ID

rs1298094

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.11:72838251 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

AATTCAGGGCAGTCCAATTTTTCCC[A/C]ATAAGGTTTCACTTTCTCAGTCTGG

Phenotype

Polymorphism

A/C, Transversion Substitution

Allele Nomenclature

Literature Links

ATG16L2 PubMed Links

Additional Information

For this assay, SNP(s) [rs76762469] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

ATG16L2

Gene Name

autophagy related 16 like 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001318766.1	2984	Intron			NP_001305695.1
NM_033388.1	2984	Intron			NP_203746.1
XM_005274376.4	2984	Intron			XP_005274433.1
XM_006718732.2	2984	Intron			XP_006718795.1
XM_006718733.3	2984	Intron			XP_006718796.1
XM_006718734.2	2984	Intron			XP_006718797.1
XM_011545332.1	2984	Intron			XP_011543634.1
XM_011545333.1	2984	Intron			XP_011543635.1
XM_011545334.1	2984	Intron			XP_011543636.1

Gene

FCHSD2

Gene Name

FCH and double SH3 domains 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_014824.2	2984	UTR 3			NP_055639.2
XM_011545409.1	2984	UTR 3			XP_011543711.1
XM_011545410.2	2984	UTR 3			XP_011543712.1
XM_017018632.1	2984	UTR 3			XP_016874121.1

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