Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CAST
Entrez Gene ID
831
Gene Name
calpastatin
Gene Aliases
BS-17, PLACK
Chromosome Location
Chr.5: 96662037 - 96774683 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001042440.3 NP_001035905.1 19 - 20 1767 110
NM_001190442.1 NP_001177371.1 20 - 21 1639 110
NM_001284212.2 NP_001271141.1 17 - 18 1418 110
NM_001284213.2 NP_001271142.1 16 - 17 1325 110
NM_173060.3 NP_775083.1 18 - 19 1475 110
NR_104285.1 6 - 7 631 110
XM_006714696.3 XP_006714759.1 22 - 23 1781 110
XM_006714697.3 XP_006714760.1 21 - 22 1798 110
XM_006714698.3 XP_006714761.1 20 - 21 1759 110
XM_006714699.3 XP_006714762.1 21 - 22 1722 110
XM_006714700.3 XP_006714763.1 20 - 21 1741 110
XM_006714701.3 XP_006714764.1 20 - 21 1757 110
XM_006714702.3 XP_006714765.1 20 - 21 1633 110
XM_006714703.3 XP_006714766.1 19 - 20 1718 110
XM_006714704.3 XP_006714767.1 20 - 21 1666 110
XM_006714705.3 XP_006714768.1 19 - 20 1675 110
XM_006714706.3 XP_006714769.1 19 - 20 1593 110
XM_006714707.3 XP_006714770.1 19 - 20 1544 110
XM_006714708.3 XP_006714771.1 18 - 19 1504 110
XM_006714709.3 XP_006714772.1 18 - 19 1467 110
XM_006714710.3 XP_006714773.1 17 - 18 1422 110
XM_006714711.3 XP_006714774.1 17 - 18 1467 110
XM_006714712.3 XP_006714775.1 16 - 17 1414 110
XM_006714713.3 XP_006714776.1 6 - 7 631 110
XM_006714714.3 XP_006714777.1 6 - 7 631 110
XM_006714715.3 XP_006714778.1 7 - 8 1357 110
XM_011543654.2 XP_011541956.1 20 - 21 1717 110
XM_011543655.2 XP_011541957.1 20 - 21 1714 110
XM_011543656.2 XP_011541958.1 19 - 20 1661 110
XM_011543657.2 XP_011541959.1 19 - 20 1543 110
XM_011543658.2 XP_011541960.1 17 - 18 1396 110
XM_017009911.1 XP_016865400.1 20 - 21 1759 110
XM_017009912.1 XP_016865401.1 21 - 22 1770 110
XM_017009913.1 XP_016865402.1 21 - 22 1739 110
XM_017009914.1 XP_016865403.1 20 - 21 1741 110
XM_017009915.1 XP_016865404.1 21 - 22 1743 110
XM_017009916.1 XP_016865405.1 20 - 21 1757 110
XM_017009917.1 XP_016865406.1 20 - 21 1675 110
XM_017009918.1 XP_016865407.1 19 - 20 1702 110
XM_017009919.1 XP_016865408.1 19 - 20 1675 110
XM_017009920.1 XP_016865409.1 19 - 20 1585 110
XM_017009921.1 XP_016865410.1 19 - 20 1602 110
XM_017009922.1 XP_016865411.1 18 - 19 1636 110
XM_017009923.1 XP_016865412.1 18 - 19 1636 110
XM_017009924.1 XP_016865413.1 18 - 19 1618 110
XM_017009925.1 XP_016865414.1 18 - 19 1554 110
XM_017009926.1 XP_016865415.1 18 - 19 1554 110
XM_017009927.1 XP_016865416.1 19 - 20 1543 110
XM_017009928.1 XP_016865417.1 18 - 19 1542 110
XM_017009929.1 XP_016865418.1 18 - 19 1461 110
XM_017009930.1 XP_016865419.1 17 - 18 1428 110
XM_017009931.1 XP_016865420.1 17 - 18 1422 110
XM_017009932.1 XP_016865421.1 16 - 17 1485 110
GenBank mRNA AB208816.1 - 20 - 21 1603 110
AF327443.1 - 15 - 16 1317 110
AK292289.1 - 6 - 7 631 110
AK292356.1 - 6 - 7 604 110
AK296919.1 - 20 - 21 1597 110
AK297879.1 - 18 - 19 1417 110
AK298541.1 - 19 - 20 1544 110
AK299402.1 - 19 - 20 1524 110
AK300624.1 - 16 - 17 1308 110
AK302206.1 - 7 - 8 631 110
AK303836.1 - 12 - 13 998 110
AK311585.1 - 7 - 8 809 110
AK311598.1 - 7 - 8 685 110
AK314290.1 - 17 - 18 1420 110
AK315146.1 - 17 - 18 1419 110
AK315673.1 - 6 - 7 579 110
AL832174.1 - 18 - 19 1460 110
AL832349.1 - 18 - 19 1463 110
AY189741.1 - 8 - 9 630 110
BC013579.1 - 19 - 20 1470 110
BC078149.1 - 14 - 15 1053 110
BT009783.1 - 16 - 17 1252 110
BX648397.1 - 17 - 18 1369 110
D16217.1 - 19 - 20 1537 110
U31345.1 - 8 - 9 647 110
U38525.1 - 1 - 2 103 110
U58996.2 - 6 - 7 610 110

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