Product Details

Assay Reference Genome
Location

Chr.16:2586715 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

Target Gene Details

Entrez Gene ID
5170
Gene Symbol
PDPK1
Gene Name
3-phosphoinositide dependent protein kinase 1
Gene Aliases
PDK1, PDPK2, PDPK2P, PRO0461
Location
Chr.16:2537964-2603190 on build GRCh38
Assay Gene Location
Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
PDPK1 NM_001261816.1 11 1314 NP_001248745.1
NM_002613.4 11 1314 NP_002604.1
NM_031268.5 8 933 NP_112558.2
XM_011522521.2 11 5002 XP_011520823.1
XM_011522523.2 8 4626 XP_011520825.1
XM_017023271.1 11 5007 XP_016878760.1
XM_017023272.1 11 1563 XP_016878761.1
XM_017023273.1 11 1272 XP_016878762.1
XM_017023274.1 12 1410 XP_016878763.1
XM_017023275.1 8 4632 XP_016878764.1
XM_017023276.1 8 876 XP_016878765.1
XM_017023277.1 9 974 XP_016878766.1
AB209835.1 11 1281 BAD93072.1
AF017995.1 11 1245 AAC51825.1
AK131060.1 11 1248
AK222581.1 11 1257 BAD96301.1
BC006339.2 8 894 AAH06339.2
BC012103.1 11 1274 AAH12103.1
BC033494.1 8 846 AAH33494.1
CR536517.1 11 1165 CAG38755.1
Y15056.1 11 1244 CAA75341.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv977895 Chr16:2582644 - 2586873 on Build GRCh38 Duplication PDPK1
esv2422427 Chr16:10001 - 2723164 on Build GRCh38 Duplication RPL23AP5 RNF151 SYNGR3 PDIA2 RAB26 SNHG19 LOC105371045 LMF1-AS1 LOC105371047 RPUSD1 HAGH MAPK8IP3 MIR6767 AMDHD2 SNRNP25 IGFALS CAPN15 HS3ST6 TELO2 TRAF7 GNG13 DECR2 ERVK13-1 MIR3180-5 TBL3 SNORA64 CASKIN1 KCTD5 ZNF598 TBC1D24 SNHG9 TMEM204 NTN3 NTHL1 LOC107987233 RHOT2 MIR3177 WDR90 TSC2 LOC106660606 SNORA10 UBE2I NDUFB10 RPL3L LOC100287175 SOX8 TPSAB1 C16orf59 CHTF18 C16orf91 SSTR5-AS1 PDPK1 PTX4 METRN AXIN1 GNPTG ABCA17P MRPL28 MSLN PKD1 STUB1 TPSD1 LOC100134368 SNORA78 SPSB3 NME4 CCDC78 MIR6859-4 PIGQ TSR3 RAB40C POLR3K LINC00235 NARFL MRPS34 METTL26 SLC9A3R2 MIR940 SNORD60 PRR35 TPSG1 HBA1 HN1L FAM234A NME3 LINC00254 MEIOB MIR6511B1 LOC652276 HBQ1 ABCA3 CEMP1 GFER WASIR2 TPSB2 RHBDL1 LMF1 E4F1 RAB11FIP3 BRICD5 EME2 MLST8 JMJD8 HBM MIR3178 CCNF CRAMP1 ARHGDIG MIR4717 LOC105371049 RPS2 C1QTNF8 LOC101929280 CCDC154 PRSS29P HBA2 MIR4516 RGS11 NHLRC4 LOC105371046 ECI1 NPW MIR6768 DDX11L10 PRR25 NPRL3 FAM173A PRSS27 MSRB1 FAHD1 MIR662 NOXO1 RNPS1 MCRIP2 LOC105371038 ATP6V0C IFT140 LOC729652 WFIKKN1 NUBP2 WDR24 MIR5587 CLCN7 SSTR5 MPG LUC7L MIR3176 UNKL MIR1225 HAGHL PGP FBXL16 RHBDF1 BAIAP3 LOC107984876 LOC105371184 MIR3677 DNASE1L2 HBZ TMEM8A FLJ42627 CACNA1H
esv2760067 Chr16:2486824 - 2820535 on Build GRCh38 Gain+Loss ERVK13-1 PRSS41 MIR3178 PRSS21 SRRM2-AS1 LOC652276 PRSS33 KCTD5 CEMP1 TBC1D24 TCEB2 PRSS27 PDPK1 AMDHD2 SRRM2 ATP6V0C FLJ42627
esv3637634 Chr16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr16:2501717 - 2663937 on Build GRCh38 Loss ERVK13-1 MIR3178 PDPK1 AMDHD2 LOC652276 CEMP1 TBC1D24 ATP6V0C FLJ42627
nsv1052260 Chr16:2074546 - 2629655 on Build GRCh38 Gain MIR6511B1 MIR6768 LOC652276 ABCA3 RAB26 SNHG19 CEMP1 C16orf59 E4F1 MIR6767 PDPK1 BRICD5 AMDHD2 RNPS1 ABCA17P PKD1 MLST8 ATP6V0C TRAF7 LOC729652 MIR3180-5 MIR3178 CCNF CASKIN1 TBC1D24 MIR4717 LOC105371049 MIR1225 PGP NTN3 MIR4516 MIR940 SNORD60 MIR3677 TSC2 DNASE1L2 LOC106660606 ECI1
nsv833123 Chr16:2561247 - 2764988 on Build GRCh38 Gain+Loss ERVK13-1 PRSS27 PDPK1 SRRM2-AS1 LOC652276 KCTD5 SRRM2 FLJ42627

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