Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
PDE1A
Entrez Gene ID
5136
Gene Name
phosphodiesterase 1A
Gene Aliases
CAM-PDE-1A, HCAM-1, HCAM1, HSPDE1A
Chromosome Location
Chr.2: 182140035 - 182523375 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001258312.1 NP_001245241.1 16 - 16 4255 76
NM_005019.4 NP_005010.2 15 - 15 4270 76
XM_017004295.1 XP_016859784.1 16 - 16 4275 76
XM_017004296.1 XP_016859785.1 16 - 16 4197 76
XM_017004297.1 XP_016859786.1 16 - 16 4138 76
XM_017004298.1 XP_016859787.1 16 - 16 4320 76
XM_017004302.1 XP_016859791.1 15 - 15 4402 76
GenBank mRNA BC047057.1 - 1 - 1 948 76


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AI150359.1 - 1 Chr. 2 - 182140481 - 182140890 [+] on Build GRCh38 76
GenBankmRNA AI672461.1 - 1 Chr. 2 - 182140481 - 182140972 [+] on Build GRCh38 76
GenBankmRNA BF509877.1 - 1 Chr. 2 - 182140481 - 182140997 [+] on Build GRCh38 76
GenBankmRNA AW614381.1 - 1 Chr. 2 - 182140485 - 182141025 [+] on Build GRCh38 76
GenBankmRNA AW590630.1 - 1 Chr. 2 - 182140481 - 182140877 [+] on Build GRCh38 76


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream protein phosphatase 1 regulatory inhibitor subunit 1C PPP1R1C IPP5 -9.1kb Anti-sense Chr. - 181954241 - 182131382 on Build GRCh38
Downstream DnaJ heat shock protein family (Hsp40) member C10 DNAJC10 ERdj5, JPDI, MTHr, PDIA19 574.4kb Anti-sense Chr. - 182716041 - 182780025 on Build GRCh38

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