Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Smpx
Entrez Gene ID
66106
Gene Name
small muscle protein, X-linked
Gene Aliases
1010001C09Rik, Csl
Chromosome Location
Chr.X: 157698973 - 157752591 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_045569.1 6 - 7 715 83
NR_103722.1 5 - 6 675 83
GenBank mRNA AF364070.1 - 5 - 6 514 83
AJ245772.1 - 5 - 6 530 83
AK003105.1 - 5 - 6 522 83
AK010172.1 - 5 - 6 522 83
AY026524.1 - 5 - 6 521 83
BC051197.1 - 5 - 6 474 83
BC061051.1 - 5 - 6 436 83
BC132358.1 - 5 - 6 350 83
BC138801.1 - 5 - 6 350 83
BQ176246.1 - 1 - 2 83
W18646.1 - 6 - 7 428 83


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BY116131.1 - 2 - 3 91 Chr. X - 157721030 - 157752423 [+] on Build GRCm38 83
GenBankmRNA AV088480.2 - 5 - 6 478 Chr. X - 157699190 - 157752588 [+] on Build GRCm38 83
GenBankmRNA CR515922.1 - 1 - 2 Chr. X - 157699222 - 157752239 [-] on Build GRCm38 83
GenBankmRNA BG794218.1 - 1 - 2 Chr. X - 157699210 - 157752241 [-] on Build GRCm38 83
GenBankmRNA BQ554133.1 - 5 - 6 496 Chr. X - 157699155 - 157752294 [+] on Build GRCm38 83
GenBankmRNA CF553557.1 - 5 - 6 645 Chr. X - 157699008 - 157752378 [+] on Build GRCm38 83
GenBankmRNA AA499581.1 - 2 - 3 106 Chr. X - 157721015 - 157752508 [+] on Build GRCm38 83
GenBankmRNA BQ554132.1 - 1 - 2 Chr. X - 157720955 - 157752589 [-] on Build GRCm38 83
GenBankmRNA CA480082.1 - 5 - 6 531 Chr. X - 157699152 - 157752443 [+] on Build GRCm38 83
GenBankmRNA CA490302.1 - Chr. - - [-] on Build 84
GenBankmRNA AA033164.1 - 5 - 6 472 Chr. X - 157699176 - 157752209 [+] on Build GRCm38 83
GenBankmRNA DV061324.1 - 5 - 6 530 Chr. X - 157699156 - 157752577 [+] on Build GRCm38 83
GenBankmRNA CB952137.1 - 5 - 6 439 Chr. X - 157699212 - 157752402 [+] on Build GRCm38 83
GenBankmRNA AI613607.1 - 2 - 3 106 Chr. X - 157721017 - 157752541 [+] on Build GRCm38 83


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream membrane-bound transcription factor peptidase, site 2 Mbtps2 9630032G22Rik, AI662535 -152.9kb Anti-sense Chr. - 157547822 - 157598715 on Build GRCm38
Downstream predicted gene 15169 Gm15169 OTTMUSG00000019393 4.6kb Anti-sense Chr. - 157757180 - 157759273 on Build GRCm38

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