Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: Sox2ot
Entrez Gene ID: 320478
Gene Name: SOX2 overlapping transcript (non-protein coding)
Gene Aliases: B230215L15Rik
Chromosome Location: Chr.3: 34560381 - 34677993 on Build GRCm38

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NR_015580.2		1 - 2	188	98
GenBank mRNA	BC057611.1	-	1 - 2	188	98

Non Gene Transcripts

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BU702442.1	-	1 - 2	187		Chr. 3 - 34560381 - 34675792 [+] on Build GRCm38	98
GenBankmRNA	BB646986.1	-	1 - 2	181		Chr. 3 - 34560388 - 34573862 [+] on Build GRCm38	98

Adjacent Gene Details

	Gene Name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromosome
Upstream	DnaJ (Hsp40) homolog, subfamily C, member 19	Dnajc19	1810055D05Rik, AA959924, Tim14	-479.0kb	Anti-sense	Chr. - 34057280 - 34081354 on Build GRCm38
Downstream	microRNA 1897	Mir1897	Mirn1897, mmu-mir-1897	77.7kb	Sense	Chr. - 34638464 - 34638542 on Build GRCm38

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