Product Details

SNP ID

rs200750033

Assay Type

Functionally Tested

NCBI dbSNP Submissions

9

Location

Chr.1:19683252 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

AATTTGGAGGTGTCTCCGGATATGG[A/G]ACCCTGGGTTTGCCCAACCTGGTGG

Phenotype

MIM: 601109

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

HTR6 PubMed Links

Additional Information

For this assay, SNP(s) [rs10917514] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

HTR6

Gene Name

5-hydroxytryptamine receptor 6

There are no transcripts associated with this gene.

Gene

TMCO4

Gene Name

transmembrane and coiled-coil domains 4

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_181719.4	2410	Missense Mutation	CCC,TCC	P565S	NP_859070.3
XM_005245822.4	2410	Missense Mutation	CCC,TCC	P565S	XP_005245879.1
XM_005245824.4	2410	Missense Mutation	CCC,TCC	P565S	XP_005245881.1
XM_005245825.4	2410	Missense Mutation	CCC,TCC	P565S	XP_005245882.1
XM_005245827.3	2410	Missense Mutation	CCC,TCC	P525S	XP_005245884.1
XM_006710551.3	2410	Missense Mutation	CCC,TCC	P565S	XP_006710614.1
XM_011541179.2	2410	Missense Mutation	CCC,TCC	P665S	XP_011539481.1
XM_011541180.2	2410	Missense Mutation	CCC,TCC	P665S	XP_011539482.1
XM_011541181.1	2410	Missense Mutation	CCC,TCC	P665S	XP_011539483.1
XM_011541185.2	2410	Missense Mutation	CCC,TCC	P565S	XP_011539487.1
XM_011541186.2	2410	Missense Mutation	CCC,TCC	P565S	XP_011539488.1
XM_017000913.1	2410	Missense Mutation	CCC,TCC	P525S	XP_016856402.1
XM_017000914.1	2410	Missense Mutation	CCC,TCC	P665S	XP_016856403.1
XM_017000915.1	2410	Missense Mutation	CCC,TCC	P665S	XP_016856404.1
XM_017000916.1	2410	Missense Mutation	CCC,TCC	P629S	XP_016856405.1
XM_017000917.1	2410	Missense Mutation	CCC,TCC	P624S	XP_016856406.1
XM_017000918.1	2410	Missense Mutation	CCC,TCC	P565S	XP_016856407.1
XM_017000919.1	2410	Missense Mutation	CCC,TCC	P565S	XP_016856408.1
XM_017000920.1	2410	Missense Mutation	CCC,TCC	P565S	XP_016856409.1
XM_017000921.1	2410	Missense Mutation	CCC,TCC	P565S	XP_016856410.1
XM_017000922.1	2410	Missense Mutation	CCC,TCC	P456S	XP_016856411.1

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