Product Details

SNP ID

rs6802796

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.3:72733589 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

GCTGAGAGCTTTAGGTGTCTCACTT[A/T]ATTCCCTCCCCCTTGAGAATCCTTG

Phenotype

MIM: 613663

Polymorphism

A/T, Transversion Substitution

Allele Nomenclature

Literature Links

SHQ1 PubMed Links

Additional Information

For this assay, SNP(s) [rs77170926] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

SHQ1

Gene Name

SHQ1, H/ACA ribonucleoprotein assembly factor

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018130.2		Intron			NP_060600.2
XM_011533895.2		Intron			XP_011532197.1
XM_011533896.2		Intron			XP_011532198.1
XM_011533897.2		Intron			XP_011532199.1
XM_011533898.2		Intron			XP_011532200.1
XM_011533899.1		Intron			XP_011532201.1
XM_017006724.1		Intron			XP_016862213.1

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