Product Details

SNP ID

rs1293987

Assay Type

Functionally Tested

NCBI dbSNP Submissions

53

Location

Chr.1:186296816 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

TAAGTTAGTGGTGAGATGAAAGAGC[A/T]GTTTTCTGATACTTTTATTTTATTT

Phenotype

MIM: 604283

Polymorphism

A/T, Transversion Substitution

Allele Nomenclature

Literature Links

PRG4 PubMed Links

Additional Information

For this assay, SNP(s) [rs79536913] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

PRG4

Gene Name

proteoglycan 4

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001127708.2	288	Intron			NP_001121180.2
NM_001127709.2	288	Intron			NP_001121181.2
NM_001127710.2	288	Intron			NP_001121182.2
NM_001303232.1	288	Intron			NP_001290161.1
NM_005807.4	288	Intron			NP_005798.3
XM_017000002.1	288	UTR 5			XP_016855491.1
XM_017000003.1	288	Intron			XP_016855492.1

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