Product Details

SNP ID

rs6499302

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.16:70156498 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

AGGGCATGGATTTCATTGGTCGCGA[C/T]GCCCTCCTGCAGCAGAAGCAGAATG

Phenotype

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

LOC400541 PubMed Links

Additional Information

For this assay, SNP(s) [rs115817341] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

LOC400541

Gene Name

uncharacterized LOC400541

There are no transcripts associated with this gene.

Gene

PDPR

Gene Name

pyruvate dehydrogenase phosphatase regulatory subunit

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001322117.1	2866	Silent Mutation	GAC,GAT	D753D	NP_001309046.1
NM_001322118.1	2866	Silent Mutation	GAC,GAT	D653D	NP_001309047.1
NM_001322119.1	2866	Silent Mutation	GAC,GAT	D351D	NP_001309048.1
NM_017990.4	2866	Silent Mutation	GAC,GAT	D753D	NP_060460.4
XM_005256015.2	2866	Silent Mutation	GAC,GAT	D753D	XP_005256072.1
XM_005256016.3	2866	Silent Mutation	GAC,GAT	D753D	XP_005256073.1
XM_006721224.2	2866	Silent Mutation	GAC,GAT	D692D	XP_006721287.1
XM_006721225.3	2866	Intron			XP_006721288.1
XM_011523190.2	2866	Intron			XP_011521492.1
XM_017023387.1	2866	Silent Mutation	GAC,GAT	D753D	XP_016878876.1
XM_017023388.1	2866	Intron			XP_016878877.1
XM_017023389.1	2866	Intron			XP_016878878.1

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