Product Details

SNP ID

rs3802840

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.11:111300921 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

GGGAGGAGCGGCCAGCAGGTAAGTA[G/T]ACATCGTTTTGTTAGGAAGACAGTG

Phenotype

MIM: 615693 MIM: 615694

Polymorphism

G/T, Transversion Substitution

Allele Nomenclature

Literature Links

COLCA1 PubMed Links

Additional Information

For this assay, SNP(s) [rs76314677] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

COLCA1

Gene Name

colorectal cancer associated 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001302644.1		Intron			NP_001289573.1
NM_001302645.1		Intron			NP_001289574.1
NM_001302646.1		Intron			NP_001289575.1
NM_001302647.1		Intron			NP_001289576.1
NM_001302648.1		Intron			NP_001289577.1
NM_207429.3		Intron			NP_997312.1

Gene

COLCA2

Gene Name

colorectal cancer associated 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001136105.2		Intron			NP_001129577.1
NM_001271457.1		Intron			NP_001258386.1
NM_001271458.1		Intron			NP_001258387.1
XM_017017196.1		Intron			XP_016872685.1
XM_017017197.1		Intron			XP_016872686.1
XM_017017198.1		Intron			XP_016872687.1
XM_017017199.1		Intron			XP_016872688.1
XM_017017200.1		Intron			XP_016872689.1

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