Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
PCDHGC5
Entrez Gene ID
56097
Gene Name
protocadherin gamma subfamily C, 5
Gene Aliases
PCDH-GAMMA-C5
Chromosome Location
Chr.5: 141489241 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018929.2 NP_061752.1 2 - 3 2521 75
GenBank mRNA AF152339.1 - 2 - 3 2521 75

Gene Symbol
PCDHGA1
Entrez Gene ID
56114
Gene Name
protocadherin gamma subfamily A, 1
Gene Aliases
PCDH-GAMMA-A1
Chromosome Location
Chr.5: 141330685 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018912.2 NP_061735.1 2 - 3 2482 75
GenBank mRNA AF152318.1 - 2 - 3 2482 75

Gene Symbol
PCDHGA10
Entrez Gene ID
56106
Gene Name
protocadherin gamma subfamily A, 10
Gene Aliases
PCDH-GAMMA-A10
Chromosome Location
Chr.5: 141413176 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018913.2 NP_061736.1 2 - 3 2497 75
GenBank mRNA AF152319.1 - 2 - 3 2497 75

Gene Symbol
PCDHGA11
Entrez Gene ID
56105
Gene Name
protocadherin gamma subfamily A, 11
Gene Aliases
PCDH-GAMMA-A11
Chromosome Location
Chr.5: 141420970 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018914.2 NP_061737.1 2 - 3 2752 75
NM_032092.1 NP_114481.1 2 - 3 2197 75
GenBank mRNA AF152320.1 - 2 - 3 2494 75
AF152504.1 - 2 - 3 1939 75
BC136781.1 - 2 - 3 2527 75
BC171774.1 - 2 - 3 2527 75

Gene Symbol
PCDHGA12
Entrez Gene ID
26025
Gene Name
protocadherin gamma subfamily A, 12
Gene Aliases
CDH21, FIB3, PCDH-GAMMA-A12
Chromosome Location
Chr.5: 141430591 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_003735.2 NP_003726.1 2 - 3 2654 75
GenBank mRNA AB011160.1 - 2 - 3 2627 75
AF152321.1 - 2 - 3 2485 75

Gene Symbol
PCDHGA2
Entrez Gene ID
56113
Gene Name
protocadherin gamma subfamily A, 2
Gene Aliases
PCDH-GAMMA-A2
Chromosome Location
Chr.5: 141338760 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018915.3 NP_061738.1 2 - 3 2697 75
GenBank mRNA AF152322.1 - 2 - 3 2485 75

Gene Symbol
PCDHGA3
Entrez Gene ID
56112
Gene Name
protocadherin gamma subfamily A, 3
Gene Aliases
PCDH-GAMMA-A3
Chromosome Location
Chr.5: 141344034 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018916.3 NP_061739.2 2 - 3 2485 75
GenBank mRNA AB208927.1 - 2 - 3 2651 75
AF152323.1 - 2 - 3 2485 75

Gene Symbol
PCDHGA4
Entrez Gene ID
56111
Gene Name
protocadherin gamma subfamily A, 4
Gene Aliases
PCDH-GAMMA-A4
Chromosome Location
Chr.5: 141355025 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018917.3 NP_061740.2 2 - 3 2658 75
GenBank mRNA AF152324.1 - 2 - 3 2482 75

Gene Symbol
PCDHGA5
Entrez Gene ID
56110
Gene Name
protocadherin gamma subfamily A, 5
Gene Aliases
CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
Chromosome Location
Chr.5: 141364331 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018918.2 NP_061741.1 2 - 3 2482 75
GenBank mRNA AF152325.1 - 2 - 3 2482 75

Gene Symbol
PCDHGA6
Entrez Gene ID
56109
Gene Name
protocadherin gamma subfamily A, 6
Gene Aliases
PCDH-GAMMA-A6
Chromosome Location
Chr.5: 141374084 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018919.2 NP_061742.1 2 - 3 2485 75
GenBank mRNA AB209178.1 - 2 - 3 2655 75
AF152326.1 - 2 - 3 2485 75
BC146651.1 - 2 - 3 2644 75

Gene Symbol
PCDHGA7
Entrez Gene ID
56108
Gene Name
protocadherin gamma subfamily A, 7
Gene Aliases
PCDH-GAMMA-A7
Chromosome Location
Chr.5: 141382739 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018920.3 NP_061743.1 2 - 3 2646 75
GenBank mRNA AB208958.1 - 2 - 3 2376 75
AF152327.1 - 2 - 3 2485 75

Gene Symbol
PCDHGA8
Entrez Gene ID
9708
Gene Name
protocadherin gamma subfamily A, 8
Gene Aliases
PCDH-GAMMA-A8
Chromosome Location
Chr.5: 141391916 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_032088.1 NP_114477.1 2 - 3 3383 75
GenBank mRNA AF152328.1 - 2 - 3 2485 75

Gene Symbol
PCDHGA9
Entrez Gene ID
56107
Gene Name
protocadherin gamma subfamily A, 9
Gene Aliases
PCDH-GAMMA-A9
Chromosome Location
Chr.5: 141402953 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018921.2 NP_061744.1 2 - 3 2485 75
GenBank mRNA AF152329.1 - 2 - 3 2485 75

Gene Symbol
PCDHGB1
Entrez Gene ID
56104
Gene Name
protocadherin gamma subfamily B, 1
Gene Aliases
PCDH-GAMMA-B1
Chromosome Location
Chr.5: 141350261 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018922.2 NP_061745.1 2 - 3 2470 75
GenBank mRNA AF152330.1 - 2 - 3 2470 75

Gene Symbol
PCDHGB2
Entrez Gene ID
56103
Gene Name
protocadherin gamma subfamily B, 2
Gene Aliases
PCDH-GAMMA-B2
Chromosome Location
Chr.5: 141360136 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018923.2 NP_061746.1 2 - 3 2482 75
GenBank mRNA AF152331.1 - 2 - 3 2482 75

Gene Symbol
PCDHGB3
Entrez Gene ID
56102
Gene Name
protocadherin gamma subfamily B, 3
Gene Aliases
PCDH-GAMMA-B3
Chromosome Location
Chr.5: 141370264 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018924.4 NP_061747.2 2 - 3 2607 75
GenBank mRNA AF152332.1 - 2 - 3 2476 75
BC150172.1 - 2 - 3 2607 75

Gene Symbol
PCDHGB4
Entrez Gene ID
8641
Gene Name
protocadherin gamma subfamily B, 4
Gene Aliases
CDH20, FIB2, PCDH-GAMMA-B4
Chromosome Location
Chr.5: 141387885 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_003736.2 NP_003727.1 2 - 3 2458 75
GenBank mRNA AF152333.1 - 2 - 3 2458 75

Gene Symbol
PCDHGB5
Entrez Gene ID
56101
Gene Name
protocadherin gamma subfamily B, 5
Gene Aliases
PCDH-GAMMA-B5
Chromosome Location
Chr.5: 141398128 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018925.2 NP_061748.1 2 - 3 2458 75
GenBank mRNA AF152334.1 - 2 - 3 2458 75

Gene Symbol
PCDHGB6
Entrez Gene ID
56100
Gene Name
protocadherin gamma subfamily B, 6
Gene Aliases
PCDH-GAMMA-B6
Chromosome Location
Chr.5: 141408203 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018926.2 NP_061749.1 2 - 3 2479 75
GenBank mRNA AF152335.1 - 2 - 3 2479 75

Gene Symbol
PCDHGB7
Entrez Gene ID
56099
Gene Name
protocadherin gamma subfamily B, 7
Gene Aliases
ME6, PCDH-GAMMA-B7
Chromosome Location
Chr.5: 141417647 - 141512981 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018927.3 NP_061750.1 2 - 3 2643 75
GenBank mRNA AF152336.1 - 2 - 3 2476 75
BC051788.2 - 2 - 3 2670 75

Gene Symbol
PCDHGC3
Entrez Gene ID
5098
Gene Name
protocadherin gamma subfamily C, 3
Gene Aliases
PC43, PCDH-GAMMA-C3, PCDH2
Chromosome Location
Chr.5: 141476002 - 141512977 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_002588.3 NP_002579.2 2 - 3 2606 75
NM_032403.2 NP_115779.1 2 - 3 206 75
GenBank mRNA AF152337.1 - 2 - 3 2491 75
BC006439.1 - 2 - 3 206 75
BC019299.1 - 2 - 3 2605 75
BC026218.1 - 2 - 3 2595 75
BC027451.1 - 2 - 3 204 75
BC063437.1 - 2 - 3 190 75
BG765565.1 - 2 - 3 207 75
L11373.1 - 2 - 3 2602 75

Gene Symbol
PCDHGC4
Entrez Gene ID
56098
Gene Name
protocadherin gamma subfamily C, 4
Gene Aliases
PCDH-GAMMA-C4
Chromosome Location
Chr.5: 141485174 - 141512979 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_018928.2 NP_061751.1 2 - 3 2503 75
GenBank mRNA AF152338.1 - 2 - 3 2503 75

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