Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: PPM1L
Entrez Gene ID: 151742
Gene Name: protein phosphatase, Mg2+/Mn2+ dependent 1L
Gene Aliases: PP2C-epsilon, PP2CE, PPM1-LIKE
Chromosome Location: Chr.3: 160755532 - 161078907 on Build GRCh38

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NM_001317911.1	NP_001304840.1	4 - 4	3361	84
	NM_001317912.1	NP_001304841.1	5 - 5	3461	84
	NM_139245.3	NP_640338.2	4 - 4	3785	84
	NR_134243.1		6 - 6	3700	84
GenBank mRNA	AK055510.1	-	1 - 1	555	84

Non Gene Transcripts

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DA243781.1	-	1	271		Chr. 3 - 161071484 - 161072060 [+] on Build GRCh38	84
GenBankmRNA	CK904198.1	-	1	58		Chr. 3 - 161071697 - 161072282 [+] on Build GRCh38	84
GenBankmRNA	BM021278.1	-	1	42		Chr. 3 - 161071713 - 161072258 [+] on Build GRCh38	84

Adjacent Gene Details

	Gene Name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromosome
Upstream	ADP ribosylation factor like GTPase 14	ARL14	ARF7	-392.8kb	Sense	Chr. - 160677160 - 160678448 on Build GRCh38
Downstream	beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)	B3GALNT1	B3GALT3, GLCT3, GLOB, Gb4Cer, P, P1, beta3Gal-T3, galT3	10.4kb	Anti-sense	Chr. - 161083883 - 161105528 on Build GRCh38

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