Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
ATG13
Entrez Gene ID
9776
Gene Name
autophagy related 13
Gene Aliases
KIAA0652, PARATARG8
Chromosome Location
Chr.11: 46617276 - 46676019 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001205119.1 NP_001192048.1 1 - 2 611 75
NM_001205120.1 NP_001192049.1 1 - 2 611 75
XM_017018601.1 XP_016874090.1 1 - 2 582 75
XM_017018610.1 XP_016874099.1 1 - 2 582 75
XM_017018616.1 XP_016874105.1 1 - 2 582 75
XM_017018621.1 XP_016874110.1 1 - 2 582 75
GenBank mRNA AB014552.1 - 1 - 2 291 75
AK223603.1 - 1 - 2 287 75


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DB240479.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645976 [+] on Build GRCh38 75
GenBankmRNA DB018022.1 - 1 - 2 306 Chr. 11 - 46617581 - 46645973 [+] on Build GRCh38 75
GenBankmRNA CV815382.1 - 1 - 2 290 Chr. 11 - 46617597 - 46650248 [+] on Build GRCh38 75
GenBankmRNA HY087428.1 - 1 - 2 320 Chr. 11 - 46617568 - 46645922 [+] on Build GRCh38 75
GenBankmRNA DA376024.1 - 1 - 2 305 Chr. 11 - 46617582 - 46645962 [+] on Build GRCh38 75
GenBankmRNA DA339359.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645953 [+] on Build GRCh38 75
GenBankmRNA DB075273.1 - 1 - 2 325 Chr. 11 - 46617563 - 46645918 [+] on Build GRCh38 75
GenBankmRNA DA722718.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645965 [+] on Build GRCh38 75
GenBankmRNA DA190921.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645968 [+] on Build GRCh38 75
GenBankmRNA DA248697.1 - 1 - 2 302 Chr. 11 - 46617586 - 46645989 [+] on Build GRCh38 75
GenBankmRNA DA805769.1 - 1 - 2 325 Chr. 11 - 46617562 - 46645914 [+] on Build GRCh38 75
GenBankmRNA DA213452.1 - 1 - 2 311 Chr. 11 - 46617579 - 46645942 [+] on Build GRCh38 75
GenBankmRNA DA098887.1 - 1 - 2 354 Chr. 11 - 46617533 - 46645893 [+] on Build GRCh38 75
GenBankmRNA DA416668.1 - 1 - 2 312 Chr. 11 - 46617575 - 46645931 [+] on Build GRCh38 75
GenBankmRNA DA338236.1 - 1 - 2 320 Chr. 11 - 46617569 - 46645981 [+] on Build GRCh38 75
GenBankmRNA DB150747.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645942 [+] on Build GRCh38 75
GenBankmRNA HY125731.1 - 1 - 2 332 Chr. 11 - 46617557 - 46645390 [+] on Build GRCh38 75
GenBankmRNA DA433670.1 - 1 - 2 319 Chr. 11 - 46617569 - 46645941 [+] on Build GRCh38 75
GenBankmRNA DA916351.1 - 1 - 2 325 Chr. 11 - 46617563 - 46645950 [+] on Build GRCh38 75
GenBankmRNA DA490296.1 - 1 - 2 331 Chr. 11 - 46617557 - 46645936 [+] on Build GRCh38 75
GenBankmRNA DA725705.1 - 1 - 2 331 Chr. 11 - 46617557 - 46645929 [+] on Build GRCh38 75
GenBankmRNA DB164824.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645980 [+] on Build GRCh38 75
GenBankmRNA DA509158.1 - 1 - 2 349 Chr. 11 - 46617541 - 46645908 [+] on Build GRCh38 75
GenBankmRNA DA526222.1 - 1 - 2 305 Chr. 11 - 46617582 - 46645954 [+] on Build GRCh38 75
GenBankmRNA DA529962.1 - 1 - 2 302 Chr. 11 - 46617585 - 46649152 [+] on Build GRCh38 75
GenBankmRNA DA213804.1 - 1 - 2 331 Chr. 11 - 46617556 - 46645906 [+] on Build GRCh38 75
GenBankmRNA DA102190.1 - 1 - 2 318 Chr. 11 - 46617572 - 46645972 [+] on Build GRCh38 75
GenBankmRNA DA578324.1 - 1 - 2 305 Chr. 11 - 46617582 - 46645938 [+] on Build GRCh38 75
GenBankmRNA DB126841.1 - 1 - 2 315 Chr. 11 - 46617573 - 46645401 [+] on Build GRCh38 75
GenBankmRNA DB284754.1 - 1 - 2 309 Chr. 11 - 46617578 - 46645940 [+] on Build GRCh38 75
GenBankmRNA DA797506.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645935 [+] on Build GRCh38 75
GenBankmRNA DA321499.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645401 [+] on Build GRCh38 75
GenBankmRNA DB292057.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645935 [+] on Build GRCh38 75
GenBankmRNA DB087646.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645946 [+] on Build GRCh38 75
GenBankmRNA BG107267.1 - 1 - 2 316 Chr. 11 - 46617570 - 46650307 [+] on Build GRCh38 75
GenBankmRNA DA404949.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645938 [+] on Build GRCh38 75
GenBankmRNA DA800743.1 - 1 - 2 323 Chr. 11 - 46617565 - 46645928 [+] on Build GRCh38 75
GenBankmRNA DA213909.1 - 1 - 2 320 Chr. 11 - 46617568 - 46645922 [+] on Build GRCh38 75
GenBankmRNA DA070334.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645919 [+] on Build GRCh38 75
GenBankmRNA DA331619.1 - 1 - 2 311 Chr. 11 - 46617576 - 46645966 [+] on Build GRCh38 75
GenBankmRNA CX165914.1 - 1 - 2 332 Chr. 11 - 46617555 - 46650281 [+] on Build GRCh38 75
GenBankmRNA HY087799.1 - 1 - 2 320 Chr. 11 - 46617568 - 46645364 [+] on Build GRCh38 75
GenBankmRNA DA340623.1 - 1 - 2 332 Chr. 11 - 46617558 - 46645952 [+] on Build GRCh38 75
GenBankmRNA HY133899.1 - 1 - 2 309 Chr. 11 - 46617579 - 46645376 [+] on Build GRCh38 75
GenBankmRNA DB284975.1 - 1 - 2 321 Chr. 11 - 46617566 - 46645928 [+] on Build GRCh38 75
GenBankmRNA DA109554.1 - 1 - 2 331 Chr. 11 - 46617556 - 46645960 [+] on Build GRCh38 75
GenBankmRNA DA242707.1 - 1 - 2 317 Chr. 11 - 46617570 - 46645919 [+] on Build GRCh38 75
GenBankmRNA DA103940.1 - 1 - 2 309 Chr. 11 - 46617578 - 46645936 [+] on Build GRCh38 75
GenBankmRNA BP237090.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645982 [+] on Build GRCh38 75
GenBankmRNA DA325139.1 - 1 - 2 326 Chr. 11 - 46617563 - 46645427 [+] on Build GRCh38 75
GenBankmRNA DA319120.1 - 1 - 2 334 Chr. 11 - 46617553 - 46645940 [+] on Build GRCh38 75
GenBankmRNA DA220333.1 - 1 - 2 309 Chr. 11 - 46617578 - 46645953 [+] on Build GRCh38 75
GenBankmRNA DA239269.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645950 [+] on Build GRCh38 75
GenBankmRNA DB151902.1 - 1 - 2 311 Chr. 11 - 46617576 - 46645990 [+] on Build GRCh38 75
GenBankmRNA DA580854.1 - 1 - 2 308 Chr. 11 - 46617582 - 46645964 [+] on Build GRCh38 75
GenBankmRNA DA234915.1 - 1 - 2 354 Chr. 11 - 46617533 - 46645939 [+] on Build GRCh38 75
GenBankmRNA DA093025.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645918 [+] on Build GRCh38 75
GenBankmRNA DB106331.1 - 1 - 2 353 Chr. 11 - 46617542 - 46645922 [+] on Build GRCh38 75
GenBankmRNA CD518744.1 - 1 - 2 309 Chr. 11 - 46617578 - 46650300 [+] on Build GRCh38 75
GenBankmRNA DB143524.1 - 1 - 2 360 Chr. 11 - 46617527 - 46645898 [+] on Build GRCh38 75
GenBankmRNA DA310353.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645973 [+] on Build GRCh38 75
GenBankmRNA DA262000.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645939 [+] on Build GRCh38 75
GenBankmRNA DA331486.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645961 [+] on Build GRCh38 75
GenBankmRNA DA291361.1 - 1 - 2 311 Chr. 11 - 46617578 - 46645973 [+] on Build GRCh38 75
GenBankmRNA DA320908.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645951 [+] on Build GRCh38 75
GenBankmRNA DA794933.1 - 1 - 2 318 Chr. 11 - 46617569 - 46645427 [+] on Build GRCh38 75
GenBankmRNA DA231926.1 - 1 - 2 347 Chr. 11 - 46617540 - 46645928 [+] on Build GRCh38 75
GenBankmRNA DA522472.1 - 1 - 2 311 Chr. 11 - 46617576 - 46645946 [+] on Build GRCh38 75
GenBankmRNA DA805894.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645908 [+] on Build GRCh38 75
GenBankmRNA DA390229.1 - 1 - 2 329 Chr. 11 - 46617559 - 46645963 [+] on Build GRCh38 75
GenBankmRNA DA236545.1 - 1 - 2 348 Chr. 11 - 46617539 - 46645935 [+] on Build GRCh38 75
GenBankmRNA BX402959.2 - 1 - 2 315 Chr. 11 - 46617572 - 46659423 [+] on Build GRCh38 75
GenBankmRNA DA490450.1 - 1 - 2 309 Chr. 11 - 46617578 - 46645964 [+] on Build GRCh38 75
GenBankmRNA DA416908.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645966 [+] on Build GRCh38 75
GenBankmRNA DA298320.1 - 1 - 2 322 Chr. 11 - 46617565 - 46645942 [+] on Build GRCh38 75
GenBankmRNA DA701362.1 - 1 - 2 331 Chr. 11 - 46617556 - 46645421 [+] on Build GRCh38 75
GenBankmRNA DA331934.1 - 1 - 2 313 Chr. 11 - 46617574 - 46645981 [+] on Build GRCh38 75
GenBankmRNA DA128382.1 - 1 - 2 322 Chr. 11 - 46617569 - 46645427 [+] on Build GRCh38 75
GenBankmRNA BG341820.1 - 293 Chr. - - [-] on Build 75
GenBankmRNA DA477304.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645941 [+] on Build GRCh38 75
GenBankmRNA DB227418.1 - 1 - 2 319 Chr. 11 - 46617568 - 46645971 [+] on Build GRCh38 75
GenBankmRNA DA526243.1 - 1 - 2 311 Chr. 11 - 46617578 - 46645950 [+] on Build GRCh38 75
GenBankmRNA DA794883.1 - 1 - 2 320 Chr. 11 - 46617569 - 46645992 [+] on Build GRCh38 75
GenBankmRNA DA199891.1 - 1 - 2 315 Chr. 11 - 46617572 - 46645956 [+] on Build GRCh38 75
GenBankmRNA DA525967.1 - 1 - 2 309 Chr. 11 - 46617578 - 46645956 [+] on Build GRCh38 75
GenBankmRNA DB063736.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645909 [+] on Build GRCh38 75
GenBankmRNA DA232135.1 - 1 - 2 318 Chr. 11 - 46617569 - 46645954 [+] on Build GRCh38 75
GenBankmRNA DA319279.1 - 1 - 2 334 Chr. 11 - 46617553 - 46645941 [+] on Build GRCh38 75
GenBankmRNA DA331622.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645984 [+] on Build GRCh38 75
GenBankmRNA BG024826.1 - 317 Chr. - - [-] on Build 75
GenBankmRNA DB223006.1 - 2 - 3 276 Chr. 11 - 46617582 - 46645984 [+] on Build GRCh38 75
GenBankmRNA DA514111.1 - 1 - 2 309 Chr. 11 - 46617578 - 46645937 [+] on Build GRCh38 75
GenBankmRNA DA026236.1 - 1 - 2 356 Chr. 11 - 46617533 - 46645907 [+] on Build GRCh38 75
GenBankmRNA DB150661.1 - 1 - 2 339 Chr. 11 - 46617548 - 46645928 [+] on Build GRCh38 75
GenBankmRNA DA751239.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645967 [+] on Build GRCh38 75
GenBankmRNA DA314719.1 - 1 - 2 331 Chr. 11 - 46617557 - 46645935 [+] on Build GRCh38 75
GenBankmRNA HY062909.1 - 1 - 2 222 Chr. 11 - 46617666 - 46649169 [+] on Build GRCh38 75
GenBankmRNA DB131530.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645892 [+] on Build GRCh38 75
GenBankmRNA DA809074.1 - 1 - 2 314 Chr. 11 - 46617573 - 46645921 [+] on Build GRCh38 75
GenBankmRNA DA127639.1 - 1 - 2 321 Chr. 11 - 46617568 - 46645961 [+] on Build GRCh38 75
GenBankmRNA DA107368.1 - 1 - 2 353 Chr. 11 - 46617542 - 46645897 [+] on Build GRCh38 75
GenBankmRNA DA336563.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645970 [+] on Build GRCh38 75
GenBankmRNA DA173418.1 - 1 - 2 327 Chr. 11 - 46617560 - 46645409 [+] on Build GRCh38 75
GenBankmRNA DA113336.1 - 1 - 2 327 Chr. 11 - 46617560 - 46645976 [+] on Build GRCh38 75
GenBankmRNA DA323929.1 - 1 - 2 310 Chr. 11 - 46617578 - 46644350 [+] on Build GRCh38 75
GenBankmRNA DA388335.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645992 [+] on Build GRCh38 75
GenBankmRNA DB241003.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645937 [+] on Build GRCh38 75
GenBankmRNA DA807282.1 - 1 - 2 360 Chr. 11 - 46617527 - 46645886 [+] on Build GRCh38 75
GenBankmRNA DA608884.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645948 [+] on Build GRCh38 75
GenBankmRNA DA220806.1 - 1 - 2 319 Chr. 11 - 46617569 - 46645401 [+] on Build GRCh38 75
GenBankmRNA DB061176.1 - 1 - 2 335 Chr. 11 - 46617553 - 46645957 [+] on Build GRCh38 75
GenBankmRNA DA317700.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645925 [+] on Build GRCh38 75
GenBankmRNA DB072616.1 - 1 - 2 305 Chr. 11 - 46617582 - 46645427 [+] on Build GRCh38 75
GenBankmRNA DA496582.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645952 [+] on Build GRCh38 75
GenBankmRNA BM554844.1 - 1 - 2 289 Chr. 11 - 46617598 - 46657611 [+] on Build GRCh38 75
GenBankmRNA DA324903.1 - 1 - 2 328 Chr. 11 - 46617560 - 46645892 [+] on Build GRCh38 75
GenBankmRNA DB066807.1 - 1 - 2 311 Chr. 11 - 46617578 - 46645967 [+] on Build GRCh38 75
GenBankmRNA DA870927.1 - 1 - 2 319 Chr. 11 - 46617578 - 46645968 [+] on Build GRCh38 75
GenBankmRNA DA497990.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645976 [+] on Build GRCh38 75
GenBankmRNA DA109917.1 - 1 - 2 353 Chr. 11 - 46617542 - 46645905 [+] on Build GRCh38 75
GenBankmRNA DA102307.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645382 [+] on Build GRCh38 75
GenBankmRNA DB008159.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645919 [+] on Build GRCh38 75
GenBankmRNA DA034157.1 - 1 - 2 345 Chr. 11 - 46617544 - 46645884 [+] on Build GRCh38 75
GenBankmRNA DA112298.1 - 1 - 2 352 Chr. 11 - 46617535 - 46645923 [+] on Build GRCh38 75
GenBankmRNA DA220594.1 - 1 - 2 315 Chr. 11 - 46617572 - 46645892 [+] on Build GRCh38 75
GenBankmRNA DA213848.1 - 1 - 2 315 Chr. 11 - 46617572 - 46645933 [+] on Build GRCh38 75
GenBankmRNA DA247886.1 - 1 - 2 305 Chr. 11 - 46617582 - 46645976 [+] on Build GRCh38 75
GenBankmRNA DB147896.1 - 1 - 2 330 Chr. 11 - 46617557 - 46645928 [+] on Build GRCh38 75
GenBankmRNA DA125812.1 - 1 - 2 314 Chr. 11 - 46617573 - 46645965 [+] on Build GRCh38 75
GenBankmRNA DA101843.1 - 1 - 2 305 Chr. 11 - 46617582 - 46645966 [+] on Build GRCh38 75
GenBankmRNA DA190357.1 - 1 - 2 319 Chr. 11 - 46617568 - 46645895 [+] on Build GRCh38 75
GenBankmRNA DB139137.1 - 1 - 2 310 Chr. 11 - 46617578 - 46645927 [+] on Build GRCh38 75
GenBankmRNA DA217611.1 - 1 - 2 302 Chr. 11 - 46617585 - 46645427 [+] on Build GRCh38 75
GenBankmRNA DA525373.1 - 1 - 2 324 Chr. 11 - 46617563 - 46645892 [+] on Build GRCh38 75


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream harbinger transposase derived 1 HARBI1 C11orf77 Anti-sense Chr. - 46603027 - 46617651 on Build GRCh38
Downstream Rho GTPase activating protein 1 ARHGAP1 CDC42GAP, RHOGAP, RHOGAP1, p50rhoGAP 32.7kb Anti-sense Chr. - 46677075 - 46700665 on Build GRCh38

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