Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SCN8A
Entrez Gene ID
6334
Gene Name
sodium voltage-gated channel alpha subunit 8
Gene Aliases
CERIII, CIAT, EIEE13, MED, NaCh6, Nav1.6, PN4
Chromosome Location
Chr.12: 51589959 - 51812865 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001177984.2 NP_001171455.1 26 - 26 8589 88
NM_014191.3 NP_055006.1 27 - 27 8712 88
XM_006719556.3 XP_006719619.1 27 - 27 9303 88
XM_011538650.2 XP_011536952.1 27 - 27 8731 88
XM_011538651.2 XP_011536953.1 27 - 27 8696 88
XM_017019794.1 XP_016875283.1 27 - 27 8709 88
XM_017019795.1 XP_016875284.1 26 - 26 8605 88


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DB367684.1 - 1 Chr. 12 - 51809706 - 51810254 [-] on Build GRCh38 88
GenBankmRNA AL117588.1 - 1 Chr. 12 - 51809705 - 51810600 [-] on Build GRCh38 88
GenBankmRNA BX954114.1 - 1 646 Chr. 12 - 51809375 - 51810142 [+] on Build GRCh38 88
GenBankmRNA AA479288.1 - 1 146 Chr. 12 - 51809876 - 51810380 [+] on Build GRCh38 88
GenBankmRNA AA479385.1 - 1 Chr. 12 - 51809876 - 51810396 [-] on Build GRCh38 88


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream solute carrier family 4 member 8 SLC4A8 NBC3, NDCBE -290.5kb Sense Chr. - 51391317 - 51515763 on Build GRCh38
Downstream fidgetin like 2 FIGNL2 5.0kb Anti-sense Chr. - 51817892 - 51848753 on Build GRCh38

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