Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNHG12
Entrez Gene ID
85028
Gene Name
small nucleolar RNA host gene 12
Gene Aliases
ASLNC04080, C1orf79, LINC00100, NCRNA00100
Chromosome Location
Chr.1: 28578538 - 28581854 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_024127.1 3 - 4 474 145
GenBank mRNA AF277181.1 - 3 - 4 262 145
BC022205.1 - 3 - 4 1103 145
BC068048.1 - 3 - 4 474 145
KJ782215.1 - 4 - 5 1603 145


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CN260333.1 - 3 - 4 479 Chr. 1 - 28578597 - 28581859 [-] on Build GRCh38 145
GenBankmRNA CN260332.1 - 3 - 4 449 Chr. 1 - 28579860 - 28581829 [-] on Build GRCh38 145
GenBankmRNA BU689408.1 - 2 - 3 Chr. 1 - 28578536 - 28581127 [+] on Build GRCh38 144
GenBankmRNA BE794361.1 - 3 - 4 454 Chr. 1 - 28578538 - 28581834 [-] on Build GRCh38 145
GenBankmRNA CA495298.1 - 3 - 4 479 Chr. 1 - 28579641 - 28581859 [-] on Build GRCh38 145
GenBankmRNA CB128668.1 - 3 - 4 493 Chr. 1 - 28579842 - 28581873 [-] on Build GRCh38 145
GenBankmRNA BM785231.1 - 3 - 4 492 Chr. 1 - 28579851 - 28581872 [-] on Build GRCh38 145
GenBankmRNA BF765335.1 - 2 - 3 163 Chr. 1 - 28578636 - 28581171 [-] on Build GRCh38 146
GenBankmRNA BU633154.1 - 2 - 3 Chr. 1 - 28578536 - 28581156 [+] on Build GRCh38 144
GenBankmRNA CA487963.1 - Chr. - - [-] on Build 145
GenBankmRNA BQ447295.1 - 3 - 4 Chr. 1 - 28578541 - 28581810 [+] on Build GRCh38 145
GenBankmRNA CA308291.1 - 3 - 4 Chr. 1 - 28578536 - 28581811 [+] on Build GRCh38 145
GenBankmRNA DR002536.1 - 3 - 4 485 Chr. 1 - 28579688 - 28581865 [-] on Build GRCh38 145
GenBankmRNA BQ002303.1 - 3 - 4 Chr. 1 - 28578541 - 28581606 [+] on Build GRCh38 145
GenBankmRNA AI749352.1 - 3 - 4 Chr. 1 - 28578575 - 28581662 [+] on Build GRCh38 145


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, H/ACA box 61 SNORA61 ACA61 -19.0 Sense Chr. - 28579764 - 28579893 on Build GRCh38
Downstream small nucleolar RNA, H/ACA box 16A SNORA16A ACA16 274.0 Sense Chr. - 28580920 - 28581053 on Build GRCh38

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