Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNHG12
Entrez Gene ID
85028
Gene Name
small nucleolar RNA host gene 12
Gene Aliases
ASLNC04080, C1orf79, LINC00100, NCRNA00100
Chromosome Location
Chr.1: 28578538 - 28581854 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_024127.1 4 - 5 535 79
GenBank mRNA AF277181.1 - 4 - 5 323 79
AY277594.1 - 2 - 3 103 79
BC022205.1 - 4 - 5 1164 79
BC034611.1 - 2 - 3 1386 79
BC068048.1 - 4 - 5 535 79
BC107730.1 - 1 - 2 927 79
KJ782215.1 - 5 - 6 1664 79


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CN260333.1 - 4 - 5 540 Chr. 1 - 28578597 - 28581859 [-] on Build GRCh38 79
GenBankmRNA CB305491.1 - 2 - 3 Chr. 1 - 28578536 - 28581010 [+] on Build GRCh38 79
GenBankmRNA CA444812.1 - 2 - 3 Chr. 1 - 28578536 - 28580320 [+] on Build GRCh38 79
GenBankmRNA BE794361.1 - 4 - 5 515 Chr. 1 - 28578538 - 28581834 [-] on Build GRCh38 79
GenBankmRNA AI632100.1 - 2 - 3 Chr. 1 - 28578536 - 28579995 [+] on Build GRCh38 79
GenBankmRNA BF765335.1 - 3 - 4 225 Chr. 1 - 28578636 - 28581171 [-] on Build GRCh38 79
GenBankmRNA BQ447295.1 - 2 - 3 Chr. 1 - 28578541 - 28581810 [+] on Build GRCh38 79
GenBankmRNA AA905228.1 - 2 - 3 Chr. 1 - 28578536 - 28580593 [+] on Build GRCh38 79
GenBankmRNA AV697366.1 - 3 - 4 484 Chr. 1 - 28579532 - 28581040 [-] on Build GRCh38 79
GenBankmRNA AA828407.1 - 2 - 3 Chr. 1 - 28578539 - 28580620 [+] on Build GRCh38 79
GenBankmRNA BU732252.1 - 2 - 3 Chr. 1 - 28578536 - 28581669 [+] on Build GRCh38 79
GenBankmRNA CA308291.1 - 2 - 3 Chr. 1 - 28578536 - 28581811 [+] on Build GRCh38 79
GenBankmRNA BU674164.1 - 2 - 3 Chr. 1 - 28578536 - 28580228 [+] on Build GRCh38 79
GenBankmRNA BQ002303.1 - 2 - 3 Chr. 1 - 28578541 - 28581606 [+] on Build GRCh38 79
GenBankmRNA EB387922.1 - 2 - 3 157 Chr. 1 - 28578536 - 28580649 [-] on Build GRCh38 79
GenBankmRNA AI749352.1 - 2 - 3 Chr. 1 - 28578575 - 28581662 [+] on Build GRCh38 79


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, C/D box 99 SNORD99 HBII-420 -711.0 Sense Chr. - 28578743 - 28578822 on Build GRCh38
Downstream small nucleolar RNA, H/ACA box 44 SNORA44 ACA44 400.0 Sense Chr. - 28580381 - 28580512 on Build GRCh38

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