Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
HCG18
Entrez Gene ID
414777
Gene Name
HLA complex group 18 (non-protein coding)
Gene Aliases
-
Chromosome Location
Chr.6: 30287397 - 30327156 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_024052.2 4 - 5 1618 72
NR_024053.2 3 - 4 1404 72
GenBank mRNA AK056160.1 - 3 - 4 621 72
AK098416.1 - 1 - 2 155 72


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AA831820.1 - 1 - 2 Chr. 6 - 30292321 - 30294542 [+] on Build GRCh38 72
GenBankmRNA AA481261.1 - 1 - 2 Chr. 6 - 30292321 - 30294783 [+] on Build GRCh38 72
GenBankmRNA HY232187.1 - 1 - 2 Chr. 6 - 30292334 - 30294654 [+] on Build GRCh38 72
GenBankmRNA BE880820.1 - 92 Chr. - - [-] on Build 72
GenBankmRNA CN289659.1 - 1 - 2 321 Chr. 6 - 30292265 - 30294789 [-] on Build GRCh38 72
GenBankmRNA AI569091.1 - 1 - 2 Chr. 6 - 30292327 - 30294581 [+] on Build GRCh38 72
GenBankmRNA AA133808.1 - 1 - 2 Chr. 6 - 30292330 - 30294524 [+] on Build GRCh38 72
GenBankmRNA AI809743.1 - 1 - 2 Chr. 6 - 30292329 - 30294605 [+] on Build GRCh38 72
GenBankmRNA N99622.1 - 1 - 2 205 Chr. 6 - 30292326 - 30294670 [-] on Build GRCh38 72
GenBankmRNA AW664920.1 - 1 - 2 Chr. 6 - 30292330 - 30294725 [+] on Build GRCh38 72
GenBankmRNA BE326475.1 - 1 - 2 Chr. 6 - 30292328 - 30294612 [+] on Build GRCh38 72
GenBankmRNA AA287919.1 - 1 - 2 Chr. 6 - 30292330 - 30294589 [+] on Build GRCh38 72
GenBankmRNA BU742512.1 - 1 - 2 Chr. 6 - 30292318 - 30294870 [+] on Build GRCh38 72
GenBankmRNA BP396539.1 - 1 - 2 226 Chr. 6 - 30292325 - 30294695 [-] on Build GRCh38 72
GenBankmRNA AA743738.1 - 1 - 2 Chr. 6 - 30292321 - 30294582 [+] on Build GRCh38 72
GenBankmRNA DB006117.1 - 1 - 2 151 Chr. 6 - 30292215 - 30294620 [-] on Build GRCh38 72
GenBankmRNA HY188217.1 - 1 - 2 Chr. 6 - 30292334 - 30294763 [+] on Build GRCh38 72
GenBankmRNA HY283805.1 - 1 - 2 Chr. 6 - 30292334 - 30294657 [+] on Build GRCh38 72
GenBankmRNA BG677509.1 - 1 - 2 279 Chr. 6 - 30292050 - 30294748 [-] on Build GRCh38 72
GenBankmRNA AA452825.1 - 1 - 2 Chr. 6 - 30292330 - 30294554 [+] on Build GRCh38 72
GenBankmRNA AA286960.1 - 1 - 2 Chr. 6 - 30292334 - 30294706 [+] on Build GRCh38 72
GenBankmRNA BF304181.1 - 3 - 4 625 Chr. 6 - 30292488 - 30314296 [-] on Build GRCh38 71
GenBankmRNA AA767556.1 - 1 - 2 Chr. 6 - 30292321 - 30294520 [+] on Build GRCh38 72
GenBankmRNA AI095640.1 - 1 - 2 Chr. 6 - 30292330 - 30294684 [+] on Build GRCh38 72
GenBankmRNA AA731897.1 - 1 - 2 Chr. 6 - 30292321 - 30294587 [+] on Build GRCh38 72
GenBankmRNA AA811477.1 - 1 - 2 Chr. 6 - 30292321 - 30294708 [+] on Build GRCh38 72
GenBankmRNA BG498410.1 - 54 Chr. - - [-] on Build 72
GenBankmRNA AA826191.1 - 1 - 2 Chr. 6 - 30292321 - 30294554 [+] on Build GRCh38 72
GenBankmRNA BM020076.1 - 1 - 2 382 Chr. 6 - 30292297 - 30294845 [-] on Build GRCh38 72
GenBankmRNA BE276734.1 - 2 - 3 619 Chr. 6 - 30292541 - 30296231 [-] on Build GRCh38 72
GenBankmRNA AI598243.1 - 1 - 2 Chr. 6 - 30292330 - 30294760 [+] on Build GRCh38 72
GenBankmRNA AA133667.1 - 1 - 2 92 Chr. 6 - 30292347 - 30294559 [-] on Build GRCh38 72
GenBankmRNA BI763370.1 - 2 - 3 595 Chr. 6 - 30292488 - 30296232 [-] on Build GRCh38 72


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream HLA complex group 17 (non-protein coding) HCG17 HCG18, LINC00046, NCRNA00046 Sense Chr. - 30234039 - 30326134 on Build GRCh38
Downstream tripartite motif containing 39 TRIM39 RNF23, TFP, TRIM39B 32.2kb Anti-sense Chr. - 30326844 - 30343729 on Build GRCh38

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