Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNORD6
Entrez Gene ID
692075
Gene Name
small nucleolar RNA, C/D box 6
Gene Aliases
mgh28S-2412
Chromosome Location
Chr.11: 93731503 - 93731573 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_003036.1 1 - 1 35 71
GenBank mRNA AJ609489.1 - 1 - 1 35 71

Gene Symbol
TAF1D
Entrez Gene ID
79101
Gene Name
TATA-box binding protein associated factor, RNA polymerase I subunit D
Gene Aliases
JOSD3, RAFI41, TAF(I)41, TAFI41
Chromosome Location
Chr.11: 93735929 - 93741537 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
GenBank mRNA AK057183.1 - 1 - 1 1302 71


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BP420133.1 - 1 96 Chr. 11 - 93731131 - 93731629 [-] on Build GRCh38 71
GenBankmRNA BM271863.1 - 1 157 Chr. 11 - 93731218 - 93731695 [-] on Build GRCh38 71
GenBankmRNA HY329858.1 - 1 Chr. 11 - 93731125 - 93731574 [+] on Build GRCh38 71
GenBankmRNA BQ897934.1 - 1 540 Chr. 11 - 93731208 - 93732078 [-] on Build GRCh38 71
GenBankmRNA CN272240.1 - 1 707 Chr. 11 - 93731485 - 93732241 [-] on Build GRCh38 71
GenBankmRNA CA942246.1 - 1 97 Chr. 11 - 93731088 - 93731626 [-] on Build GRCh38 71


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, H/ACA box 32 SNORA32 ACA32 -404.0 Sense Chr. - 93730979 - 93731099 on Build GRCh38
Downstream small nucleolar RNA, H/ACA box 1 SNORA1 ACA1 431.0 Sense Chr. - 93732004 - 93732133 on Build GRCh38

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