Assay Design
The assay primers and probes lie within a single exon. This assay will detect gDNA.
Gene Transcripts
- Gene Symbol
- SNORD6
- Entrez Gene ID
-
692075
- Gene Name
- small nucleolar RNA, C/D box 6
- Gene Aliases
-
mgh28S-2412
- Chromosome Location
-
Chr.11: 93731503 - 93731573 on Build GRCh38
Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
Amplicon Length |
RefSeq |
NR_003036.1 |
|
1 - 1 |
35 |
71 |
GenBank mRNA |
AJ609489.1 |
- |
1 - 1 |
35 |
71 |
- Gene Symbol
- TAF1D
- Entrez Gene ID
-
79101
- Gene Name
- TATA-box binding protein associated factor, RNA polymerase I subunit D
- Gene Aliases
-
JOSD3, RAFI41, TAF(I)41, TAFI41
- Chromosome Location
-
Chr.11: 93735929 - 93741537 on Build GRCh38
Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
Amplicon Length |
GenBank mRNA |
AK057183.1 |
- |
1 - 1 |
1302 |
71 |
Non Gene Transcripts
Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
IMAGE Clone ID |
Transcript Location |
Amplicon Length |
GenBankmRNA |
BP420133.1 |
- |
1 |
96 |
|
Chr. 11 - 93731131 - 93731629 [-] on Build GRCh38 |
71 |
GenBankmRNA |
BM271863.1 |
- |
1 |
157 |
|
Chr. 11 - 93731218 - 93731695 [-] on Build GRCh38 |
71 |
GenBankmRNA |
HY329858.1 |
- |
1 |
|
|
Chr. 11 - 93731125 - 93731574 [+] on Build GRCh38 |
71 |
GenBankmRNA |
BQ897934.1 |
- |
1 |
540 |
|
Chr. 11 - 93731208 - 93732078 [-] on Build GRCh38 |
71 |
GenBankmRNA |
CN272240.1 |
- |
1 |
707 |
|
Chr. 11 - 93731485 - 93732241 [-] on Build GRCh38 |
71 |
GenBankmRNA |
CA942246.1 |
- |
1 |
97 |
|
Chr. 11 - 93731088 - 93731626 [-] on Build GRCh38 |
71 |
Adjacent Gene Details
|
Gene Name |
Gene Symbol |
Alias |
Distance |
Relative Direction |
Location Chromosome |
Upstream |
small nucleolar RNA, H/ACA box 32 |
SNORA32 |
ACA32 |
-404.0
|
Sense |
Chr. - 93730979 - 93731099 on Build GRCh38 |
Downstream |
small nucleolar RNA, H/ACA box 1 |
SNORA1 |
ACA1 |
431.0
|
Sense |
Chr. - 93732004 - 93732133 on Build GRCh38 |
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