Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNHG3
Entrez Gene ID
8420
Gene Name
small nucleolar RNA host gene 3
Gene Aliases
NCRNA00014, RNU17C, RNU17D, U17HG, U17HG-A, U17HG-AB
Chromosome Location
Chr.1: 28505943 - 28510892 on Build GRCh38
Interrogated Sequence Translated Protein RNADB ID Exon Boundary Assay Location Amplicon Length
RefSeq NR_002909.2
3 - 3 2147 139
NR_036473.1
4 - 4 2255 139
GenBank mRNA AF075052.1 -
1 - 1 363 139
AJ006835.1 - LIT1315
U17HG		 3 - 3 2047 139


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AA563638.1 - 1 Chr. 1 - 28510625 - 28510892 [-] on Build GRCh38 139
GenBankmRNA BQ334417.1 - 1 Chr. 1 - 28510635 - 28511073 [-] on Build GRCh38 139
GenBankmRNA AA705507.1 - 1 Chr. 1 - 28510597 - 28510891 [-] on Build GRCh38 139
GenBankmRNA H46276.1 - 1 Chr. 1 - 28510432 - 28510873 [-] on Build GRCh38 139
GenBankmRNA AI652562.1 - 1 Chr. 1 - 28508951 - 28510886 [-] on Build GRCh38 139
GenBankmRNA AW970811.1 - Chr. - - [-] on Build 139
GenBankmRNA AW449599.1 - Chr. - - [-] on Build 139
GenBankmRNA AA704185.1 - 1 Chr. 1 - 28510444 - 28510891 [-] on Build GRCh38 139
GenBankmRNA BQ334425.1 - 1 Chr. 1 - 28510695 - 28511119 [-] on Build GRCh38 139
GenBankmRNA CN479181.1 - 1 Chr. 1 - 28510212 - 28510892 [-] on Build GRCh38 139
GenBankmRNA AW629400.1 - 1 Chr. 1 - 28510502 - 28510891 [-] on Build GRCh38 139
GenBankmRNA BX102072.1 - 1 361 Chr. 1 - 28510442 - 28510892 [+] on Build GRCh38 139


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, H/ACA box 73B SNORA73B 105A, E1c, RNU105A, RNU17B, U17B -115.0 Sense Chr. - 28508558 - 28508715 on Build GRCh38
Downstream tRNA selenocysteine 1 associated protein 1 TRNAU1AP PRO1902, SECP43, TRSPAP1 42.1kb Sense Chr. - 28553017 - 28578545 on Build GRCh38

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