Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
TOR1AIP2
Entrez Gene ID
163590
Gene Name
torsin 1A interacting protein 2
Gene Aliases
IFRG15, LULL1, NET9
Chromosome Location
Chr.1: 179839967 - 179878614 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001199260.1 NP_001186189.1 7 - 7 7052 112
NM_145034.4 NP_659471.1 6 - 6 6633 112
XM_005244939.4 XP_005244996.1 7 - 7 7025 112
XM_017000474.1 XP_016855963.1 8 - 8 7170 112
XM_017000475.1 XP_016855964.1 6 - 6 6894 112
XM_017000476.1 XP_016855965.1 3 - 3 6334 112
GenBank mRNA AK002036.1 - 1 - 1 1955 112


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CB125649.1 - 1 130 Chr. 1 - 179840920 - 179841375 [-] on Build GRCh38 112
GenBankmRNA BQ030186.1 - 1 Chr. 1 - 179840919 - 179841468 [+] on Build GRCh38 112
GenBankmRNA CB124045.1 - 1 130 Chr. 1 - 179840919 - 179841375 [-] on Build GRCh38 112
GenBankmRNA CB177814.1 - 1 Chr. 1 - 179841091 - 179841626 [+] on Build GRCh38 112
GenBankmRNA AI478475.1 - 1 Chr. 1 - 179840919 - 179841307 [+] on Build GRCh38 112
GenBankmRNA HY289107.1 - 1 Chr. 1 - 179841051 - 179841492 [+] on Build GRCh38 112
GenBankmRNA BM906755.1 - 401 Chr. - - [-] on Build 112
GenBankmRNA AA699594.1 - 1 Chr. 1 - 179840919 - 179841625 [+] on Build GRCh38 112
GenBankmRNA AI275079.1 - 1 Chr. 1 - 179840917 - 179841379 [+] on Build GRCh38 112
GenBankmRNA AI161071.1 - 1 Chr. 1 - 179840921 - 179841387 [+] on Build GRCh38 112
GenBankmRNA CB125929.1 - 1 130 Chr. 1 - 179840919 - 179841375 [-] on Build GRCh38 112
GenBankmRNA BQ013983.1 - 1 Chr. 1 - 179840919 - 179841646 [+] on Build GRCh38 112
GenBankmRNA R78621.1 - Chr. - - [-] on Build 112
GenBankmRNA AA677996.1 - 1 Chr. 1 - 179841067 - 179841509 [+] on Build GRCh38 112
GenBankmRNA HY348019.1 - 1 Chr. 1 - 179841084 - 179841494 [+] on Build GRCh38 112
GenBankmRNA AA398386.1 - 1 Chr. 1 - 179841088 - 179842213 [+] on Build GRCh38 112
GenBankmRNA BF969611.1 - 1 472 Chr. 1 - 179840939 - 179841717 [-] on Build GRCh38 112
GenBankmRNA BQ183378.1 - 1 Chr. 1 - 179841084 - 179841694 [+] on Build GRCh38 112
GenBankmRNA AI245251.1 - 1 Chr. 1 - 179841066 - 179841491 [+] on Build GRCh38 112
GenBankmRNA CB125087.1 - 1 130 Chr. 1 - 179840921 - 179841375 [-] on Build GRCh38 112
GenBankmRNA AI640533.1 - 1 Chr. 1 - 179840919 - 179841390 [+] on Build GRCh38 112
GenBankmRNA R62143.1 - Chr. - - [-] on Build 112
GenBankmRNA BQ447883.1 - 1 Chr. 1 - 179840919 - 179841503 [+] on Build GRCh38 112
GenBankmRNA BU858635.1 - 117 Chr. - - [-] on Build 112
GenBankmRNA H03452.1 - 1 Chr. 1 - 179841104 - 179841494 [+] on Build GRCh38 112
GenBankmRNA AW628050.1 - 1 Chr. 1 - 179840916 - 179841369 [+] on Build GRCh38 112
GenBankmRNA CA312339.1 - 1 Chr. 1 - 179841084 - 179841718 [+] on Build GRCh38 112
GenBankmRNA BX099455.1 - 1 Chr. 1 - 179841137 - 179841830 [-] on Build GRCh38 113


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream family with sequence similarity 163 member A FAM163A C1orf76, NDSP -24.7kb Anti-sense Chr. - 179727763 - 179816198 on Build GRCh38
Downstream torsin 1A interacting protein 1 TOR1AIP1 LAP1, LAP1B 38.8kb Anti-sense Chr. - 179882042 - 179920077 on Build GRCh38

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