Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
FUBP1
Entrez Gene ID
8880
Gene Name
far upstream element binding protein 1
Gene Aliases
FBP, FUBP, hDH V
Chromosome Location
Chr.1: 77944055 - 77979494 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_011542391.2 XP_011540693.1 22 - 22 3032 67
XM_011542392.2 XP_011540694.1 22 - 22 3063 67
XM_011542393.2 XP_011540695.1 21 - 21 3003 67
XM_017002739.1 XP_016858228.1 23 - 23 3054 67
XM_017002740.1 XP_016858229.1 21 - 21 4895 67
XM_017002741.1 XP_016858230.1 22 - 22 3047 67
XM_017002742.1 XP_016858231.1 21 - 21 6148 67
XM_017002743.1 XP_016858232.1 20 - 20 4867 67
XM_017002744.1 XP_016858233.1 20 - 20 6089 67
GenBank mRNA AL049951.1 - 1 - 1 1044 67

Gene Symbol
NEXN
Entrez Gene ID
91624
Gene Name
nexilin F-actin binding protein
Gene Aliases
CMH20, NELIN
Chromosome Location
Chr.1: 77888515 - 77946329 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_005271322.3 XP_005271379.1 14 - 14 67
XM_005271325.3 XP_005271382.1 13 - 13 67


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AA251462.1 - 1 217 Chr. 1 - 77944539 - 77944935 [-] on Build GRCh38 67
GenBankmRNA R36255.1 - 127 Chr. - - [-] on Build 67
GenBankmRNA CB266957.1 - 1 290 Chr. 1 - 77944366 - 77945006 [-] on Build GRCh38 67
GenBankmRNA BG621556.1 - 1 394 Chr. 1 - 77944332 - 77945113 [-] on Build GRCh38 67
GenBankmRNA BE936937.1 - 1 152 Chr. 1 - 77944610 - 77944851 [-] on Build GRCh38 67
GenBankmRNA AA210753.1 - 1 86 Chr. 1 - 77944526 - 77944804 [-] on Build GRCh38 67
GenBankmRNA CN483975.1 - 1 Chr. 1 - 77944548 - 77945122 [+] on Build GRCh38 67
GenBankmRNA BM548607.1 - 1 611 Chr. 1 - 77944404 - 77945319 [-] on Build GRCh38 67
GenBankmRNA BE936906.1 - 1 138 Chr. 1 - 77944610 - 77944849 [-] on Build GRCh38 67
GenBankmRNA AW020028.1 - 1 48 Chr. 1 - 77944287 - 77944759 [-] on Build GRCh38 67
GenBankmRNA AA252456.1 - 1 Chr. 1 - 77944644 - 77944821 [+] on Build GRCh38 67
GenBankmRNA CB139359.1 - 1 120 Chr. 1 - 77944397 - 77944838 [-] on Build GRCh38 67
GenBankmRNA AW965105.1 - 1 447 Chr. 1 - 77944515 - 77945165 [-] on Build GRCh38 67
GenBankmRNA AV747505.1 - 1 159 Chr. 1 - 77944321 - 77944877 [-] on Build GRCh38 67
GenBankmRNA BE718231.1 - 1 Chr. 1 - 77944668 - 77944858 [+] on Build GRCh38 67
GenBankmRNA CB137936.1 - 1 120 Chr. 1 - 77944395 - 77944838 [-] on Build GRCh38 67
GenBankmRNA BE834457.1 - 308 Chr. - - [-] on Build 67
GenBankmRNA BQ360827.1 - 1 Chr. 1 - 77944656 - 77944858 [+] on Build GRCh38 67
GenBankmRNA AA460780.1 - 1 416 Chr. 1 - 77944605 - 77945128 [-] on Build GRCh38 67
GenBankmRNA CN428262.1 - 1 497 Chr. 1 - 77944591 - 77945215 [-] on Build GRCh38 67


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream NEXN antisense RNA 1 NEXN-AS1 C1orf118 -54.5kb Sense Chr. - 77881348 - 77889539 on Build GRCh38
Downstream DnaJ heat shock protein family (Hsp40) member B4 DNAJB4 DNAJW, DjB4, HLJ1 33.5kb Anti-sense Chr. - 77979158 - 78017964 on Build GRCh38

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